Job Description P38104 Confidence 25.45% Date Thu Jan 5 11:57:58 GMT 2012 Rank 468 Aligned Residues 110 % Identity 8% Template c3n2bD_ PDB info PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. Resolution 1.80 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.
Predicted Secondary structure																				.	.	.																																																			.	.
Query SS confidence																				.	.	.																																																			.	.
Query Sequence		Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	.	.	.	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	.	.	T	V	T	P	I	A	V
Query Conservation																				.	.	.																																																			.	.
Alig confidence																				.	.	.											.	.	.	.	.	.														.				.	.	.	.														.	.
Template Conservation																																	.	.	.	.	.	.														.				.	.	.	.
Template Sequence		S	R	A	T	L	E	R	H	W	H	A	F	D	K	S	V	G	D	Y	P	H	L	I	C	Y	A	V	K	A	N	S	.	.	.	.	.	.	N	L	G	V	L	N	T	L	A	R	L	G	S	.	G	F	D	.	.	.	.	I	V	S	V	G	E	L	E	R	V	L	A	A	G	G	D	P	S	K	V	V	F
Template Known Secondary structure																	T		S	S								G	G	G			.	.	.	.	.	.											T	T		.				.	.	.	.		S	S										T	T			G	G	G
Template Predicted Secondary structure																																	.	.	.	.	.	.														.				.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80					.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H
Query Conservation
Alig confidence																			.								.	.	.	.	.
Template Conservation																			.								.	.	.	.	.
Template Sequence		S	G	V	G	K	T	E	A	E	M	K	R	A	L	Q	L	K	.	I	K	C	F	N	V	E	.	.	.	.	.	S	E	P	E	L	Q	R	L	N	K	V	A	G	E	L	G	V	K	A	P	I	S
Template Known Secondary structure				T	T												T	T	.		S						.	.	.	.	.	S															T
Template Predicted Secondary structure																			.								.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions