Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 40 Aligned Residues 350 % Identity 24% Template c3mkcA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:racemase; PDBTitle: crystal structure of a putative racemase Resolution 1.77 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.							.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																.																																			.	.	.	.	.	.
Query SS confidence																.																																			.	.	.	.	.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	P	G	.	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	.	.	.	.	.	.	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I	W	Q	F	F	Y	K	G
Query Conservation																.																																			.	.	.	.	.	.
Alig confidence																.																																			.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	I	K	S	I	E	F	I	P	V	N	Y	Q	S	Q	N	T	V	V	V	K	V	T	D	E	N	G	V	Y	G	L	G	E	A	D	G	S	P	D	A	I	L	A	Y	A	N	I	E	T	E	H	K	W	L	T	N	I	T	E	K	A	I	G	R	L	P	I	E	I	N	A	I	W	D	A	X	Y	D	A
Template Known Secondary structure																											T	T	S									S										T					B	T	T	B			T	T	T	T	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		74	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.									.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure					.																																																				.	.	.	.	.	.	.	.
Query SS confidence					.																																																				.	.	.	.	.	.	.	.
Query Sequence		A	Y	W	.	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	S	.	.	.	.	.	.	.	.	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F	K
Query Conservation					.																																																				.	.	.	.	.	.	.	.
Alig confidence					.																																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Q	W	Q	G	X	R	G	L	G	X	F	A	L	S	G	I	D	X	A	L	Y	D	L	A	G	K	Q	L	G	V	P	A	Y	Q	L	L	G	G	T	N	K	D	K	V	H	P	Y	L	T	L	Y	P	A	I	P	D	A	S	L	D	V	A	I	K	G	Y	A	P	L	L	E	K	A	K	A	H	N	I	R
Template Known Secondary structure		T					S	S	T																						T		B					T	T			S		S											S																							T	T		S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	.	P	I	E	A	A
Query Conservation																																																																												.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	K	V	C	V	P	I	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	S	T	K	E	V	A	Y	Y	L	R	E	L	R	G	I	L	G	H	D	T	D	X	X	V	D	Y	L	Y	R	F	T	D	W	Y	E	V	A
Template Known Secondary structure									T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				S	S	S							T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.																																.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	L	N	S	I	E	D	L	E	L	Y	F	A	E	A	T	L	Q	H	D	D	L	S	G	H	A	K	L	V	E	N	T	R	S	R	I	C	G	A	E	X	S	T	T	R	F	E	A	E	E	W	I	T	K	G	K	V	H	L	L	Q	S	D	Y	N	R	C	G	G	L	T	E	L	R	R	I	T	E	X
Template Known Secondary structure							T	G	G	G			S				S		S		T	T													S	S		B				T	T													T	T			S						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.					.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	E	.	.	.	.	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E	K
Query Conservation																																														.	.	.	.
Alig confidence																.	.																													.	.	.	.
Template Conservation																.	.
Template Sequence		A	T	A	N	N	V	Q	V	X	P	H	N	W	K	.	.	T	G	I	T	S	A	A	A	I	H	Y	Q	F	A	V	G	N	A	P	Y	F	E	Y	V	H	P	E	F	C	D	G	E	L	R	K	Y	L	V	T	P	E	A	E	L	V	D	G	G	F	A	K	P	T	A	P	G	L	G	I	D	L	N	Q	E
Template Known Secondary structure					T	T									S	.	.															T			S	S							G	G	G									S								B	T	T	B						S	S	B	T
Template Predicted Secondary structure																.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	A	S
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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