Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 87 Aligned Residues 322 % Identity 20% Template c3ijlA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:muconate cycloisomerase; PDBTitle: structure of dipeptide epimerase from bacteroides thetaiotaomicron2 complexed with l-pro-d-glu; nonproductive substrate binding. Resolution 1.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																.	.	.	.																																											.	.
Query SS confidence																.	.	.	.																																											.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	P	G	.	.	.	.	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	.	.	G	R	D	A	H	R	I	E	D	I	W	Q	F	F	Y	K	G	A
Query Conservation																.	.	.	.																																											.	.
Alig confidence																.	.	.	.												.																															.	.
Template Conservation																															.
Template Sequence		Y	E	L	K	L	R	H	V	F	T	V	A	T	Y	S	R	T	T	T	P	D	V	Q	V	E	I	E	Y	E	.	G	V	T	G	Y	G	E	A	S	M	P	P	Y	L	G	E	T	V	E	S	V	M	N	F	L	K	K	V	N	L	E	Q	F	S	D	P	F	Q	L	E	D	I	L	S	Y	V	D	S	L	S
Template Known Secondary structure													T	T																T	.	T											G	G	G	S											T	T				T	T				T	T												T
Template Predicted Secondary structure																															.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	W	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F	K	A	I	R	V	Q	C	G	I	P	G
Query Conservation
Alig confidence					.	.	.	.	.																																																									.													.	.	.
Template Conservation					.	.	.	.	.																																																									.													.	.	.
Template Sequence		P	K	D	.	.	.	.	.	T	A	A	K	A	A	V	D	I	A	L	H	D	L	V	G	K	L	L	G	A	P	W	Y	K	I	W	G	L	N	K	E	K	T	P	S	T	T	F	T	I	G	I	D	T	P	D	V	V	R	A	K	T	K	E	C	.	A	G	L	F	N	I	L	K	V	K	L	G	.	.	.
Template Known Secondary structure		S			.	.	.	.	.																				T	S	B					T	T			G	G	G			B	B			B																	.		T	T		S	S						S	.	.	.
Template Predicted Secondary structure					.	.	.	.	.																																																									.													.	.	.
Template SS confidence
		132	.	.						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	.	P	I	E	A	A	R	F	G	K	S	I	E	D	Y	R
Query Conservation																																																																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.															.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	N	D	K	E	M	I	E	T	I	R	S	V	.	.	T	D	L	P	I	A	V	D	A	N	Q	G	W	K	D	R	Q	Y	A	L	D	M	I	H	W	L	K	E	K	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S											T	T	.	.										T	T																		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
																																				203	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S
Query Conservation
Alig confidence																																												.	.
Template Conservation																																												.	.
Template Sequence		I	V	M	I	E	Q	P	M	P	K	E	Q	L	D	D	I	A	W	V	T	Q	Q	S	P	L	P	V	F	A	D	E	S	L	Q	R	L	G	D	V	A	A	L	.	.	K	G	A	F	T	G	I	N	I	K	L	M	K	C	T	G	M	R	E	A	W	K	M	V	T	L	A	H	A	L	G	M	R	V	M	V
Template Known Secondary structure									S		T	T											T		S	S					S	T	T			S	G	G	G	T	G	G	G	.	.	B	T	T	B	S										T	S														T	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E
Query Conservation
Alig confidence		.																													.	.	.	.
Template Conservation		.																													.	.	.	.
Template Sequence		.	G	C	M	T	E	T	S	C	A	I	S	A	A	S	Q	F	S	P	A	V	D	F	A	D	L	D	G	N	.	.	.	.	L	L	I	S	N	D	R	F	K	G	V	E	V	V	N	G	K	I	T	L	N	D	L	P	G	I	G	V	M
Template Known Secondary structure		.				S											T	T	G	G	G		S						G	G	.	.	.	.	G	G	B	S					B						T	T						S		S	B	T			B
Template Predicted Secondary structure		.																													.	.	.	.
Template SS confidence
			325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions