Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 17 Aligned Residues 355 % Identity 29% Template c3h12B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50 Resolution 1.50 Å

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		1	.	.	.	.	.	.	.	.	10	.																	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	I	T	E	V	K	A	H	A	L	S	T	P	I	P	E	R	M	R	V	E	S	G	A	G	L	K	L	N	R	Q	M	I	L	V	E	V	R	T	D	E	G	V	T	G	V	G	S	P	S	G	P	Y	D	L	A	V	L	K	R	A	I	E	D	V	I	G	P	Q	L	I	G	E	D	P	A	N	I	N
Template Known Secondary structure																		G	G	G					T	T			B													T	T	S									S	S	S												T	T					T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		65	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																																									.										.	.
Query SS confidence														.	.	.																																									.										.	.
Query Sequence		D	I	W	Q	F	F	Y	K	G	A	Y	W	.	.	.	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	.	V	M	V	Y	C	H	T	T	G	.	.	H	S	I	D	E	A	L	D	D	Y	A	R	H
Query Conservation														.	.	.																																									.										.	.
Alig confidence														.	.	.																																									.										.	.
Template Conservation
Template Sequence		Y	L	W	H	K	V	F	H	G	E	V	S	R	N	L	G	H	R	S	V	G	I	A	A	M	S	G	V	D	I	A	L	W	D	L	K	G	R	A	M	N	Q	P	I	Y	Q	L	L	G	G	K	F	H	T	R	G	V	R	A	Y	A	S	S	I	Y	W	D	L	T	P	D	Q	A	A	D	E	L	A	G	W
Template Known Secondary structure											T							S	S	S																						T	S	B					T	T	S		S		S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	L	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	Q	G	F	T	A	A	K	L	K	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	P	R	K	D	A	A	N	L	R	A	M	R	Q	R	V	G	A	D	V	E	I	L	V	D	A	N	Q	S	L	G
Template Known Secondary structure					T		S							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																		S	S	S							T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.																																				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		P	I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	.	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M
Query Conservation																																					.
Alig confidence																																					.
Template Conservation
Template Sequence		R	H	D	A	L	A	M	L	R	I	L	D	E	A	G	C	Y	W	F	E	E	P	L	S	I	D	D	I	E	G	H	R	I	L	R	A	Q	G	T	P	V	R	I	A	T	G	E	N	L	Y	T	R	N	A	F	N	D	Y	I	R	N	D	A	I	D	V	L	Q	A	D	A	S	R	A	G	G	I	T	E	A
Template Known Secondary structure															T	T		S				S		S		T	T										T	T			S	S						T	T													T	T			S						T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		R	R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	.	G	Y	S	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F
Query Conservation																																																.
Alig confidence																						.	.																									.
Template Conservation																						.	.
Template Sequence		L	A	I	S	A	S	A	A	S	A	H	L	A	W	N	P	H	T	F	N	.	.	D	I	I	T	V	A	A	N	L	H	L	V	A	A	S	P	H	P	A	M	F	E	W	D	I	T	H	N	D	L	M	T	R	L	A	S	Y	D	L	K	L	E	N	G	L	V	Q	P	P	Q	G	P	G	L	G	F	E	I
Template Known Secondary structure											T	T								T	T	.	.	S														S	S	S									S	S		G	G	G	T	T	S	B	S						B	T	T							S	S	B	T	S	S		B
Template Predicted Secondary structure																						.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	K	L	A	A	K	Y	P	Y	E	P	A	Y	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	W	D	F	V	A	A	H	A	W	K	G	E	P	A	I
Template Known Secondary structure									T	B			S			S	B
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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