Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 31 Aligned Residues 351 % Identity 23% Template c3fv9D_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of putative mandelate racemase/muconatelactonizing2 enzyme from roseovarius nubinhibens ism complexed with magnesium Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.																	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40						.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	.	.	.	.	.	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence		L	K	I	T	R	I	D	I	H	R	T	D	L	P	V	R	G	G	V	Y	R	L	S	G	G	R	E	Y	H	S	Y	D	A	T	I	V	S	I	E	T	D	T	G	L	T	G	W	G	E	S	T	P	F	G	S	T	Y	I	A	A	H	A	G	G	T	R	A	A	L	E	L	L	A	P	A	I	L	G	M	D
Template Known Secondary structure																B	S	S	S					G	G	G				S												T	T	S										S	T	T	S	S	S	S																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q
Query Conservation
Alig confidence																				.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		P	R	Q	H	D	R	I	W	D	R	M	R	D	T	L	K	G	H	.	.	.	.	.	R	D	A	R	A	A	L	D	I	A	C	W	D	I	A	A	Q	A	A	G	L	P	L	C	D	M	T	G	G	R	V	A	G	P	V	P	V	I	S	S	I	G	G	D	T	P	E	A	M	R	A	K	V	A	R	H	R
Template Known Secondary structure		T	T														S	S		.	.	.	.	.																				T		B	G	G	G	T	T	T				S	S		B								S
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	G	F	K	G	H	S	I	K	I	G	A	S	E	A	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	A	L	D	A	E	R	I	T	A	C	L	A	D	R	Q	P	G	E	W	Y	L	A	D	A	N	N	G	L	T	V
Template Known Secondary structure				T												T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T			T	T								T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																															.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R
Query Conservation
Alig confidence																									.	.
Template Conservation																									.	.
Template Sequence		E	H	A	L	R	M	L	S	L	L	P	P	G	L	D	I	V	L	E	A	P	C	A	.	.	S	W	A	E	T	K	S	L	R	A	R	C	A	L	P	L	L	L	D	E	L	I	Q	T	E	T	D	L	I	A	A	I	R	D	D	L	C	D	G	V	G	L	K	V	S	K	Q	G	G	I	T	P	M	L	R
Template Known Secondary structure											S		S	S										S	.	.	S									T	T			S					S	T	T			S										T	T			S										T	S
Template Predicted Secondary structure																									.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	E	Q	M	.	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E
Query Conservation																																																				.
Alig confidence																.																																				.
Template Conservation																.
Template Sequence		Q	R	A	I	A	A	A	A	G	M	V	M	S	V	.	Q	D	T	V	G	S	Q	I	S	F	A	A	I	L	H	L	A	Q	S	T	P	R	H	L	L	R	C	A	L	D	T	R	A	M	T	T	A	E	L	A	E	I	D	A	P	L	R	D	G	G	A	S	A	P	S	D	P	G	L	G	L	R	V	N	R
Template Known Secondary structure										T						.			S	S															T	S		T	T	T							G	G	G	T	B				S							S	B	T	T	B	B					S	S	B	T						G
Template Predicted Secondary structure																.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		379	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	A	K	Y	P	Y	E	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	L	G	T	P	V	K	T	F	G
Template Known Secondary structure		G	G	T		S		S
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions