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Job DescriptionP38104
Confidence100.00%DateThu Jan 5 11:57:58 GMT 2012
Rank53Aligned Residues341
% Identity25%Templatec3eezA_
PDB info PDB header:isomeraseChain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme from silicibacter pomeroyi
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MKIVKAEVFVT. . . . . . . . . . CPGRNFVTLKITTEDGITGLGDATLNGRE. . . . . LSVASYLQDHLCPQLIGRDAHRIED
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Template Sequence  LKITRITVYQVDLPLEHPYWKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPGIRAGIETMAPFVLGLDPRRLLD
Template Known Secondary structure 

BSS





TT




S
SSSSS

TTS
TT
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   66...70.........80.........90.........100.........110.........120.........130.........140.....
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Query Sequence  IWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASREGVMVYCHTTGHSIDEALDDYARHQELGFKA
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Template Sequence  VERAMDIALPGH. . . . . LYAKSPIDMACWDIAGQAAGLPIADLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVA
Template Known Secondary structure  SSS
.....TTSBTT



S
BB

B
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TT

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   87..90........ .100.........110.........120.........130.........140.........150.........160.
 
   146...150.........160.........170.........180.........190.........200.........210.........220.....
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Query Sequence  IRVQCGIPGMKTTYGMSKGKGLAYEPATKGQWPEEQLWSTEKYLDFMPKLFDAVRNKFGFNEHLLHDMHHRLTPIEAARF
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Template Sequence  HSVKIGG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRV
Template Known Secondary structure 

S...................................
TTS

TT

TT


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   162...... .170.........180.........190.........200......
 
   226...230.........240.........250.........260.........270.........280.........290.........300.....
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Query Sequence  GKSIEDYRMFWMEDPTPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTLTHAGGITGMRRIADFAS
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Template Sequence  MRATEDLHV. MFEQPG. . ETLDDIAAIRPLHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIAL
Template Known Secondary structure  TGGGT
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S..SSTGGG




TT

STT

STS
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   207..210..... ....220. ........230.........240.........250.........260.........270.........280...
 
   306...310.........320.........330.........340.........350. ........360.........370.........380...
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Query Sequence  LYQVRTGSHGPSDLSPVCMAAALHFDLWVPNFGVQEYMGYSEQMLE. . VFPHNWTFDNGYMHPGDKPGLGIEFDEKLAAK
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Template Sequence  THGIDMFVMA. TGGSVLADAEALHLAATIPDHACHAVWACQDMLTVDIAGGRGPRNIDGHLHLPETPGLGVHPDEDALGD
Template Known Secondary structure  TT

.SS
STS
GGGB

B

SGGGBS

TTTT
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BTT



SSBTS



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   284.....290... ......300.........310.........320.........330.........340.........350.........360..
 
   384.
Predicted Secondary structure 

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Query Sequence  YP
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Template Sequence  PV
Template Known Secondary structure 
S
Template Predicted Secondary structure 
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   363.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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