Job Description P38104 Confidence 48.03% Date Thu Jan 5 11:57:58 GMT 2012 Rank 373 Aligned Residues 199 % Identity 12% Template c3cyvA_ PDB info PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism Resolution 2.80 Å

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		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																						.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence		L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	G	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	.	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		Y	L	R	A	L	L	R	Q	P	V	D	V	T	P	V	W	M	M	R	Q	A	G	R	Y	L	P	E	Y	K	A	T	R	A	Q	A	G	D	F	M	S	L	C	K	N	A	E	L	A	C	E	V	T	L	Q	P	L	R	R	Y	P	L	D	A	A	I	L	F	S	D	I	L	T	V	P	D	A	M	G	L	G
Template Known Secondary structure							T	T				S	S			B			T	T		S	S	T	T	S											S	S					T	T											T	G	G	G	T	S			S								T	T					T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.								.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																																															.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.																																															.	.	.	.	.	.	.
Query Sequence		K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	.	.	.	.	.	.	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E	A	A	.	.	.	.	.	.	.	R	F	G	K	S	I
Query Conservation																	.	.	.	.	.	.																																															.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	F	E	A	G	E	G	P	R	F	T	S	P	V	T	C	K	A	D	V	D	K	L	P	I	P	D	P	E	D	E	L	G	Y	V	M	N	A	V	R	T	I	R	H	E	L	K	G	E	V	P	L	I	G	F	S	G	S	P	W	T	L	A	T	Y	M	V	E	G	G	S	S	K	A	F	T	V	I	K
Template Known Secondary structure						S	S	S					S	S				S						T						T	T	T	T	T														T	T	T	S	S																			S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.											.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	.	.	.	.	.	.	.	.	.	.	R	R
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.																.																		.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.																.
Template Sequence		K	M	M	.	.	.	.	.	.	.	.	.	.	Y	A	D	P	Q	A	L	H	A	L	L	D	K	L	.	.	.	.	.	.	.	.	A	K	S	V	T	L	Y	L	N	A	Q	I	K	A	G	.	A	Q	A	V	M	I	F	D	T	W	G	G	V	L	T	G	R	D	Y	Q	Q	F	S	L	Y	Y	M	H	K
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	T	T													.	.	.	.	.	.	.	.														T	T	.		S							T	T	G	G	G	S									T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.																.
Template SS confidence
		169	170	.											.	.	.	.	.	.	.	.	180	.	.	.	.	.									.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		I	A	D	F	A	S	L	Y	Q	V	R	T	.	.	.	G	S	H	G	P	S	D	L	S	P	V
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence		I	V	D	G	L	L	R	E	N	D	G	R	R	V	P	V	T	L	F	T	K	G	G	G	Q	W
Template Known Secondary structure						S		S			T	T										T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions