Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 98 Aligned Residues 310 % Identity 15% Template c3cawB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:o-succinylbenzoate synthase; PDBTitle: crystal structure of o-succinylbenzoate synthase from2 bdellovibrio bacteriovorus liganded with mg Resolution 1.87 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		K	I	V	K	A	E	V	F	V	T	C	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	.	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	R	R	G	P
Query Conservation																																										.
Alig confidence																																										.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	S	Y	S	P	Y	T	L	K	P	V	A	R	E	G	V	L	L	K	V	E	W	N	D	G	L	Y	G	F	A	D	L	H	P	W	P	E	L	G	D	L	S	L	E	E	Q	L	S	D	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	R
Template Known Secondary structure												B													T	T	S											G	G	G	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																										.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G
Query Conservation
Alig confidence																																	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		M	T	T	Q	I	E	Q	S	I	W	L	A	R	R	D	A	L	L	R	K	E	K	K	H	V	F	D	G	G	E	K	.	.	.	.	.	.	I	K	N	N	Y	L	L	S	H	F	Q	D	L	K	P	G	F	L	D	G	L	K	N	E	G	Y	N	T	V	K	V	K	M	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																							T		B	T	T	T	T	S			.	.	.	.	.	.			B						T	T	S				T	T								T	T									S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	L	Q	K	E	A	D	M	L	T	H	I	A	.	.	.	A	S	G	M	R	M	R	L	D	F	N	A	L	G	S	W	Q	T	F	E	K	F	M	V	N	L	P	L	T	V	R	P	L	I	E	Y	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S														.	.	.		T	T								T	T		S												S		T	T	T	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
																												133	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S
Query Conservation
Alig confidence																																					.	.												.	.	.	.																						.
Template Conservation																																					.	.												.	.	.	.																						.
Template Sequence		E	D	P	F	P	F	D	F	H	A	W	G	E	A	R	K	L	A	K	I	A	L	D	N	Q	Y	D	K	V	P	W	G	K	I	A	.	.	S	A	P	F	D	V	I	V	I	K	P	.	.	.	.	A	K	T	D	V	D	K	A	V	A	Q	C	Q	K	W	N	L	K	L	A	V	.	T	S	Y	M	D	H
Template Known Secondary structure					S	S										T	T	T	S					S	T	T	G	G	G	S		G	G	G		S	.	.	S		S		S						T	.	.	.	.	T	T	S												T	T						.	B			S
Template Predicted Secondary structure																																					.	.												.	.	.	.																						.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.						.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	.	.	.	.	.	F	G	V	Q	E	Y	M	G	Y	S	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E	K	L	A	A	K	Y	P	Y	E
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		P	V	G	V	V	H	A	V	G	V	A	M	E	L	K	D	K	Y	G	D	M	I	L	E	S	G	C	L	T	H	R	L	Y	Q	M	D	S	F	A	A	E	L	S	T	Q	G	P	Y	L	L	K	N	K	G	T	G	V	G	F	D	K	L	L	E	A	L	T	W	Y	Q	L	K
Template Known Secondary structure																				G	G	G	B			B	B				G	G	G	B				T	T	G	G	G					T	T						S	S	S	B	T	S								S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions