Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 29 Aligned Residues 356 % Identity 30% Template c3bjsB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a member of enolase superfamily from polaromonas2 sp. js666 Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.														.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I	W
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	K	I	T	K	I	N	A	I	P	L	S	Y	R	L	P	T	V	T	M	G	V	G	S	T	I	K	R	D	A	I	I	I	R	V	E	T	S	E	G	I	T	G	Y	G	E	A	H	P	G	R	S	P	G	A	I	T	S	L	I	H	N	T	I	A	P	M	L	I	G	M	K	A	T	D	C	V	G	A	W
Template Known Secondary structure			B																			T	T																T	T	S										T	T												T	T	T	T	T	T	T	T	S	B	T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure											.	.																																														.	.
Query SS confidence											.	.																																														.	.
Query Sequence		Q	F	F	Y	K	G	A	Y	W	.	.	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	.	.	H	T	T	G	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F
Query Conservation											.	.																																														.	.
Alig confidence											.	.																																														.	.
Template Conservation
Template Sequence		Q	R	V	H	R	M	Q	L	S	S	H	G	L	G	A	G	A	A	L	A	I	S	G	I	D	M	A	L	W	D	I	R	G	K	A	A	N	M	P	L	Y	E	L	L	G	G	S	K	R	R	I	P	A	Y	A	G	G	I	A	L	G	Y	Q	P	K	E	S	L	A	E	E	A	Q	E	Y	I	A	R	G	Y
Template Known Secondary structure								T	T	S	S	S	S		T																							T		B					T	T												S	S		S		S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E	A	A
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	L	K	L	R	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	A	R	V	D	I	E	R	V	R	H	V	R	K	V	L	G	D	E	V	D	I	L	T	D	A	N	T	A	Y	T	M	A	D	A	R
Template Known Secondary structure		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																		T	T	S							T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.																																				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	.	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		R	V	L	P	V	L	A	E	I	Q	A	G	W	L	E	E	P	F	A	C	N	D	F	A	S	Y	R	E	V	A	K	I	T	P	L	V	P	I	A	A	G	E	N	H	Y	T	R	F	E	F	G	Q	M	L	D	A	G	A	V	Q	V	W	Q	P	D	L	S	K	C	G	G	I	T	E	G	I	R	I	A	A
Template Known Secondary structure										T	T		S						S		T	T									T	T	T		S	S	S						T	T																						B	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	.	G	Y	S	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E	K	L	A
Query Conservation																																											.
Alig confidence																	.	.																									.
Template Conservation																	.	.
Template Sequence		M	A	S	A	Y	R	I	P	I	N	A	H	S	S	A	.	.	T	G	L	N	H	A	A	T	I	H	F	L	A	A	T	E	N	A	G	Y	F	E	A	C	V	S	K	F	N	P	F	R	D	M	F	G	T	F	E	I	G	A	D	G	C	V	E	P	P	D	A	P	G	L	G	I	E	V	D	E	S	I	F
Template Known Secondary structure						T	T			B			B			S	.	.	S															T	T	B									S	S		T	T	T	T	S	S							T	T	S						S	S	S	B	T						G	G	G	T
Template Predicted Secondary structure																	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		382	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Y	P	Y	E	P	A	Y	L	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	Y	P	A	V	D	G	P	G	Y	V
Template Known Secondary structure		T	T	S					S
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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