Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 18 Aligned Residues 370 % Identity 26% Template c2qq6B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme- PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme-like protein from rubrobacter3 xylanophilus dsm 9941 Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		K	I	V	K	A	E	V	F	V	T	C	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	.	.	R	R	G
Query Conservation																																																																													.	.
Alig confidence																												.											.																																						.	.
Template Conservation																												.											.
Template Sequence		R	I	T	R	V	E	T	A	A	I	R	A	V	G	P	S	V	L	V	R	V	W	A	G	D	E	.	H	G	L	G	E	C	Y	P	S	A	.	P	A	A	G	I	H	H	I	V	X	N	X	E	E	Q	L	L	G	E	D	P	R	D	V	E	R	L	Y	E	K	X	R	R	W	N	I	F	T	G	G	Q	A
Template Known Secondary structure													S	S	S										T	T		.										S	.												T	G	G	G	T	T	T			T	T													T	T	T	T	T	T	T	S
Template Predicted Secondary structure																												.											.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	V	I	T	A	L	S	G	I	E	T	A	L	W	D	L	A	G	K	L	Q	G	V	P	V	Y	R	L	L	G	G	A	F	R	R	R	V	R	L	Y	A	D	C	N	A	G	T	V	D	A	A	A	H	H	I	E	G	G	L	F	E	E	G	S	N	E	E	Y	I	A	V	A	R	E	A	V	E	R	G
Template Known Secondary structure		S																						T	S		G	G	G	T	T	T			S		S								T	T	G	G	G			T	T	S				T	T		S	S	S	S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	D	A	I	K	L	D	V	D	D	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	L	H	R	D	F	W	N	G	A	I	S	P	R	E	H	E	A	X	V	A	R	V	A	A	V	R	E	A	V	G	P	E	V	E	V	A	I	D	X	H	G	R	F	D	I	P	S	S
Template Known Secondary structure			S									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T		S		S	S	S																								S	S	S							T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.																			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	F	A	R	A	X	E	P	F	G	L	L	W	L	E	E	P	T	P	P	E	N	L	D	A	L	A	E	V	R	R	S	T	S	T	P	I	C	A	G	E	N	V	Y	T	R	F	D	F	R	E	L	F	A	K	R	A	V	D	Y	V	X	P	D	V	A	K	C	G	G	L	A	E	A	K	R	I	A	N
Template Known Secondary structure									G	G	G	T		S						S		S	S										T	T		S	S						T	T														T			S										T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	E	Q	M	L	E	.	.	.	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E	K
Query Conservation																																																			.	.	.
Alig confidence																	.	.																																	.	.	.
Template Conservation																	.	.
Template Sequence		L	A	E	L	D	Y	I	P	F	A	P	H	N	V	S	.	.	S	P	V	G	T	V	A	A	A	H	V	C	A	A	V	S	N	F	A	V	L	E	W	H	A	I	D	X	P	H	W	E	D	F	V	R	Y	P	G	G	P	V	I	R	E	G	H	I	E	L	T	E	E	P	G	L	G	L	E	L	D	E	E
Template Known Secondary structure						T	T			B							.	.														S		T	T	B								T	T		T	T	S	G	G	G				S	S	S		S	B		S	S								S	G	G	G
Template Predicted Secondary structure																	.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	K	Y	P	Y	E	P	A	Y	L	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	F	E	H	R	H	E	K	G	V	P	F	F
Template Known Secondary structure						T	B
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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