Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 1 Aligned Residues 384 % Identity 66% Template c2qjjC_ PDB info PDB header:lyase Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	R	R	G	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	I	T	A	A	R	V	I	I	T	C	P	G	R	N	F	V	T	L	K	I	E	T	D	Q	G	V	Y	G	I	G	D	A	T	L	N	G	R	E	L	S	V	V	A	Y	L	Q	E	H	V	A	P	C	L	I	G	M	D	P	R	R	I	E	D	I	W	Q	Y	V	Y	R	G	A	Y	W	R	R	G	P
Template Known Secondary structure														S	S	S										T	T	S										T	T												T						T	T	S		T	T													T	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G
Query Conservation
Alig confidence																																																																												.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		V	T	M	R	A	I	A	A	V	D	M	A	L	W	D	I	K	A	K	M	A	G	M	P	L	Y	Q	L	L	G	G	R	S	R	D	G	I	M	V	Y	G	H	A	N	G	S	D	I	A	E	T	V	E	A	V	G	H	Y	I	D	M	G	Y	K	A	I	R	A	Q	T	G	V	P	G	.	.	.	.	.	.
Template Known Secondary structure																							T	S	B						T			S		S	S										S	S														T	T		S									T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	L	P	S	V	T	G	W	D	T	R	K	A	L	N	Y	V	P	K	L	F	E	E	L	R	K	T	Y	G	F	D	H	H	L	L	H	D	G	H	H	R	Y	T	P	Q	E	A	A	N	L	G	K	M	L	E	P	Y	Q	L	F	W	L	E	D	C
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T														S	S	S							T	T		S													G	G	G			S				S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	A	E	N	Q	E	A	F	R	L	V	R	Q	H	T	V	T	P	L	A	V	G	E	I	F	N	T	I	W	D	A	K	D	L	I	Q	N	Q	L	I	D	Y	I	R	A	T	V	V	G	A	G	G	L	T	H	L	R	R	I	A	D	L	A	S	L	Y	Q	V	R	T	G	C	H	G	A	T	D	L	S
Template Known Secondary structure		S			S	S	G	G	G	G									S						T	T			S	G	G	G	T						T	T			S						T	T	T	T	T															T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E	K	L	A	A	K	Y	P	Y	E	P	A	Y	L	P	V	A	R	L	E	D	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	T	M	G	C	A	L	H	F	D	T	W	V	P	N	F	G	I	Q	E	Y	M	R	H	T	E	E	T	D	A	V	F	P	H	D	Y	W	F	E	K	G	E	L	F	V	G	E	T	P	G	H	G	V	D	I	D	E	E	L	A	A	K	Y	P	Y	K	P	A	Y	L	P	V	A	R	L	E	D	G	T
Template Known Secondary structure																T	T	B																S		B	S					T	T								S	B	S	S	B								T	T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		401	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	N	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	W	N	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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