Job Description P38104 Confidence 40.81% Date Thu Jan 5 11:57:58 GMT 2012 Rank 404 Aligned Residues 110 % Identity 12% Template c2qghA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine Resolution 2.30 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.
Predicted Secondary structure																			.							.	.																																																		.	.
Query SS confidence																			.							.	.																																																		.	.
Query Sequence		Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	.	F	N	E	H	L	L	.	.	H	D	M	H	H	R	L	T	P	I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	.	.	I	A	V
Query Conservation																			.							.	.																																																		.	.
Alig confidence																			.							.	.						.	.	.	.	.	.														.				.	.	.	.																		.	.
Template Conservation																																	.	.	.	.	.	.														.				.	.	.	.
Template Sequence		D	F	D	K	I	K	Q	A	F	L	N	Y	K	E	A	F	K	G	R	K	S	L	I	C	Y	A	L	K	A	N	S	.	.	.	.	.	.	N	L	S	I	L	S	L	L	A	H	L	E	S	.	G	A	D	.	.	.	.	C	V	S	I	G	E	I	Q	R	A	L	K	A	G	I	K	P	Y	R	I	V	F
Template Known Secondary structure																T	T		S	S								G	G	G			.	.	.	.	.	.											T	T		.				.	.	.	.		S	S										T	T			G	G	G
Template Predicted Secondary structure																																	.	.	.	.	.	.														.				.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.							50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H
Query Conservation
Alig confidence																			.								.	.	.	.	.
Template Conservation																			.								.	.	.	.	.
Template Sequence		S	G	V	G	K	S	A	F	E	I	E	Q	A	L	K	L	N	.	I	L	F	L	N	V	E	.	.	.	.	.	S	F	M	E	L	K	T	I	E	T	I	A	Q	S	L	G	I	K	A	R	I	S
Template Known Secondary structure				T	T												T	T	.		S						.	.	.	.	.	S															T
Template Predicted Secondary structure																			.								.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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