Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 22 Aligned Residues 348 % Identity 26% Template c2qdeA_ PDB info PDB header:lyase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1 Resolution 1.93 Å

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		1	.	.	.	.	.	.	.	.	10	.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.							.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure														.	.	.																							.	.	.	.	.	.																					.
Query SS confidence														.	.	.																							.	.	.	.	.	.																					.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	.	.	.	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	.	.	.	.	.	.	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	.	L	I	G	R	D	A	H	R	I	E	D	I	W	Q	F	F
Query Conservation														.	.	.																							.	.	.	.	.	.																					.
Alig confidence														.	.	.																							.	.	.	.	.	.																					.
Template Conservation
Template Sequence		L	K	I	T	K	V	E	V	I	P	I	S	T	P	M	K	R	I	D	G	V	L	L	K	L	H	S	D	E	G	L	V	G	I	A	D	A	G	D	T	S	S	W	Y	R	G	E	T	Q	D	S	I	T	S	M	I	C	D	F	F	A	P	K	V	L	L	G	E	D	P	T	K	I	E	K	I	V	G	R	M
Template Known Secondary structure																													T	T	S												T	T	T	T														T					T	T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	G	A	Y	W	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F	K	A	I	R	V	Q	C
Query Conservation
Alig confidence									.	.	.	.	.
Template Conservation									.	.	.	.	.
Template Sequence		D	I	L	T	R	D	N	.	.	.	.	.	N	Q	A	K	A	T	V	D	F	A	L	H	D	L	V	G	K	R	F	G	V	P	V	Y	Q	L	L	G	G	K	T	I	E	R	I	P	L	G	L	V	L	G	A	G	E	P	E	A	V	A	E	E	A	L	A	V	L	R	E	G	F	H	F	V	K	L	K	A
Template Known Secondary structure						S	S		.	.	.	.	.																				T	S	B					T	T			S		S	S			B							S																T		S
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E	A	A	R	F	G	K	S	I	E
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	L	K	A	D	I	A	M	V	A	E	V	R	R	A	V	G	D	D	V	D	L	F	I	D	I	N	G	A	W	T	Y	D	Q	A	L	T	T	I	R	A	L	E
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																		T	T	S							T	T															G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		169																																				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F	A	S	L	Y	Q	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y	N	L	S	K	I	E	Q	P	L	P	A	W	D	L	D	G	M	A	R	L	R	G	K	V	A	T	P	I	Y	A	D	E	S	A	Q	E	L	H	D	L	L	A	I	I	N	K	G	A	A	D	G	L	M	I	K	T	Q	K	A	G	G	L	L	K	A	Q	R	W	L	T	L	A	R	L	A	N	L	P
Template Known Secondary structure		G	G			S						S		T	T										T	T		S	S					S	T	T			S											T			S										T	S															T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.												340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	.	.	.	.	.	.	.	.	.	.	.	Q	E	Y	M	G	Y	S	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E	K
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		V	I	C	G	C	M	V	G	.	S	G	L	E	A	S	P	A	A	H	L	L	A	A	N	D	W	I	A	Q	F	P	Q	E	N	A	G	P	L	H	I	H	D	C	L	N	S	R	D	I	D	N	D	I	A	L	N	V	P	R	F	E	G	G	Y	L	Y	P	N	D	G	P	G	L	G	I	E	L	N	E	D
Template Known Secondary structure								S		.																T	T	G	G	G	S		B									T	T		S	S	G	G	G					S	B	T	T						T	T							S	S	B	T				B
Template Predicted Secondary structure										.
Template SS confidence
		294	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	K	Y	P	Y	E	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	R	R	L	V	T	P	G	K
Template Known Secondary structure							B		T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions