Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 52 Aligned Residues 346 % Identity 21% Template c2qddA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a member of enolase superfamily from roseovarius2 nubinhibens ism Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.															.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.						.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	.	.	.	.	.	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation
Template Sequence		L	R	I	T	R	L	T	V	F	H	L	D	L	P	L	A	K	P	Y	W	L	S	G	L	K	F	D	R	L	D	S	T	Y	L	R	I	D	T	D	E	G	V	T	G	W	G	E	G	C	P	W	G	H	S	Y	L	P	A	H	G	P	G	L	R	A	G	I	A	T	L	A	P	H	L	L	G	L	D	P	R
Template Known Secondary structure																																								T	T	S										S	T	T	T	S	S	S																		T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L
Query Conservation
Alig confidence																		.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		S	L	D	H	V	N	R	V	M	D	L	Q	L	P	G	H	.	.	.	.	.	S	Y	V	K	S	P	I	D	M	A	C	W	D	I	L	G	Q	V	A	G	L	P	L	W	Q	L	L	G	G	E	A	A	T	P	V	P	I	N	S	S	I	S	T	G	T	P	D	Q	M	L	G	L	I	A	E	A	A	A	Q
Template Known Secondary structure														S		S		.	.	.	.	.																				T		B					T	T		S	S						B						S
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	R	T	H	S	A	K	I	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	P	A	Q	D	I	A	R	I	E	A	I	S	A	G	L	P	D	G	H	R	V	T	F	D	V	N	R	A	W	T	P	A	I
Template Known Secondary structure		T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S															S			T	T								T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.																																			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A
Query Conservation
Alig confidence														.	.											.	.
Template Conservation														.	.											.	.
Template Sequence		A	V	E	V	L	N	S	V	R	A	R	D	.	.	W	I	E	Q	P	C	Q	T	L	D	.	.	Q	C	A	H	V	A	R	R	V	A	N	P	I	M	L	D	E	C	L	H	E	F	S	D	H	L	A	A	W	S	R	G	A	C	E	G	V	K	I	K	P	N	R	V	G	G	L	T	R	A	R	Q	I	R
Template Known Secondary structure							T	S						.	.						S	S	S			.	.							T	T			S						T	T			S											T			S										T	S
Template Predicted Secondary structure														.	.											.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	E	Q	M	L	E	.	.	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E	K
Query Conservation																																																				.	.
Alig confidence														.																																						.	.
Template Conservation														.
Template Sequence		D	F	G	V	S	V	G	W	Q	M	H	I	.	E	D	V	G	G	T	A	L	A	D	T	A	A	L	H	L	A	A	S	T	P	E	A	N	R	L	A	S	W	L	G	H	A	H	L	A	D	D	P	I	P	G	Q	G	A	R	N	R	D	G	L	A	T	P	P	S	A	P	G	L	G	V	I	P	D	P	E
Template Known Secondary structure								T						.			S	S															T	S		T	T	T	B			B			G	G	G	G	B	S			S	S	T	T		S				B	T	T							S	S	B	T						G	G
Template Predicted Secondary structure														.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	K	Y	P	Y	E	P	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	G	R	P	V	A	S	Y	D	E
Template Known Secondary structure		G	S		S		S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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