Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 58 Aligned Residues 341 % Identity 23% Template c2ppgB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:putative isomerase; PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti Resolution 2.49 Å

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		2	.	.	.	.	.	.	.	10	.	.																					.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	V	K	A	E	V	F	V	T	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	K	K	I	E	S	F	T	L	T	L	P	R	P	N	G	R	G	Y	L	V	R	K	A	N	R	T	V	Y	P	T	F	D	R	S	V	L	V	R	I	E	T	E	N	G	A	V	G	W	G	E	T	Y	G	L	V	A	P	R	A	T	X	E	I	I	D	D	L	L	A	D	F	T	I	G	R	D	P	F
Template Known Secondary structure																		T	T	S					T	T	T	T					S												T	T											S	S												T	T	G	G	G	T	T	T			G	G
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																																																		.
Query SS confidence																	.	.																																																		.
Query Sequence		R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	.	.	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	.	H	S	I	D	E	A	L	D	D	Y	A	R	H
Query Conservation																	.	.																																																		.
Alig confidence																	.	.																																																		.
Template Conservation
Template Sequence		D	A	A	A	I	H	D	D	L	Y	D	L	X	R	V	R	G	Y	T	G	G	F	Y	V	D	A	L	A	A	I	D	I	A	L	W	D	L	A	G	K	L	A	G	L	P	V	C	K	L	L	G	G	Q	R	R	D	R	I	A	A	Y	I	S	G	L	P	E	D	T	R	A	K	R	A	E	L	A	A	A	W
Template Known Secondary structure		G											T	T	G	G	G	T		S	S																							T	S	B	G	G	G	G	T	T					S												S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	L	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	K	G	F	S	S	F	K	F	A	S	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	E	X	E	I	L	R	E	R	L	G	P	A	V	R	I	A	C	D	X	H	W	A	H	T
Template Known Secondary structure			T	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S	S	S								S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190																																									.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R
Query Conservation
Alig confidence																																																																										.
Template Conservation																																																																										.
Template Sequence		A	S	E	A	V	A	L	I	K	A	X	E	P	H	G	L	W	F	A	E	A	P	V	R	T	E	D	I	D	G	L	A	R	V	A	A	S	V	S	T	A	I	A	V	G	E	E	W	R	T	V	H	D	X	V	P	R	V	A	R	R	A	L	A	I	V	Q	P	E	X	G	H	.	K	G	I	T	Q	F	X
Template Known Secondary structure													G	G	G									S		T	T										T	T		S	S						T	T			S	G	G	G	T						T	T			S									.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	.	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D
Query Conservation																																																		.
Alig confidence																	.																																	.
Template Conservation																	.
Template Sequence		R	I	G	A	Y	A	H	V	H	H	I	K	V	I	P	.	H	A	T	I	G	A	G	I	F	L	A	A	S	L	Q	A	S	A	A	L	A	N	V	D	C	H	E	F	Q	H	S	I	F	E	P	N	R	R	L	L	V	G	D	X	D	C	L	N	G	E	Y	V	V	P	T	G	P	G	L	G	V	E	P	S
Template Known Secondary structure										T	T						.				S	S		S														T	T	B											T	G	G	G	G	G				S					T	T							S	S	B	T	S
Template Predicted Secondary structure																	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		378	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	A	A	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	A	Q	G	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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