Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 75 Aligned Residues 346 % Identity 21% Template c2oz8B_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mll7089 protein; PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti Resolution 2.48 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.															.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	.	.	.	.	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		L	S	L	S	H	F	R	I	T	R	F	Q	F	A	R	D	R	V	I	G	D	S	Q	V	R	A	D	D	V	N	V	A	A	L	E	L	V	S	E	S	G	E	V	G	L	G	F	I	Q	T	L	F	N	P	L	P	D	Q	Q	E	I	E	S	V	F	E	H	E	V	W	P	S	L	K	G	N	R	A	I	A
Template Known Secondary structure																							S	S																T	T	S										S	S	S																T					T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	.	.	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E
Query Conservation																																																																		.	.
Alig confidence					.	.	.	.	.	.	.	.	.																																							.														.	.
Template Conservation					.	.	.	.	.	.	.	.	.																																							.
Template Sequence		L	V	H	.	.	.	.	.	.	.	.	.	R	V	N	R	P	R	Y	S	L	P	F	H	E	A	V	Q	V	A	L	W	D	L	A	A	K	E	A	G	L	P	L	H	V	L	L	G	S	R	.	R	N	R	V	K	A	Y	A	S	G	L	D	F	H	L	D	D	D	A	F	V	S	L	F	S	H	A	A	S
Template Known Secondary structure			T	T	.	.	.	.	.	.	.	.	.									S	S																	T	T		B					T	T		S	.		S										B	T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																							.
Template SS confidence
		81	.	.										.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	Y	S	A	F	K	I	K	V	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	F	D	R	D	L	R	R	L	E	L	L	K	T	C	V	P	A	G	S	K	V	M	I	D	P	N	E	A	W	T	S	K
Template Known Secondary structure		T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S														T	S		T	T								T	T		B
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.																																			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		221	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		E	A	A	R	F	G	K	S	I	E	D	.	.	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R
Query Conservation													.	.
Alig confidence													.	.																																																									.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		E	A	L	T	K	L	V	A	I	R	E	A	G	H	D	L	L	W	V	E	D	P	I	L	R	H	D	H	D	G	L	R	T	L	R	H	A	V	T	W	T	Q	I	N	S	G	E	Y	L	D	L	Q	G	K	R	L	L	L	E	A	H	A	A	D	I	L	N	V	H	.	.	.	.	G	Q	V	T	D	V	M
Template Known Secondary structure													T	T								S		B		T	T														S	S						T	T												T	T			S						.	.	.	.	S
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E
Query Conservation
Alig confidence																							.	.	.	.	.	.																				.	.
Template Conservation																							.	.	.	.	.	.																				.	.
Template Sequence		R	I	G	W	L	A	A	E	L	G	I	P	I	S	I	G	N	T	F	L	E	.	.	.	.	.	.	A	G	V	H	M	A	V	A	L	P	E	V	E	W	L	E	Y	S	F	.	.	Q	N	F	D	H	L	V	E	Q	P	I	E	I	R	D	G	Y	A	Y	A	P	D	R	P	G	H	G	L	V	L	S	E
Template Known Secondary structure											T									G	G	G	.	.	.	.	.	.	T	T								T	T									.	.		T	T	G	G	G	B	S	S						T	T						S	S	S	B	T	S			B
Template Predicted Secondary structure																							.	.	.	.	.	.																				.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.							300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.				.	.	.	.	.	400	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		K	L	A	A	K	Y	P	Y	E	P	A	Y	L	P	V	A	.	.	.	R	L	E	D	G	T	L	W
Query Conservation																		.	.	.
Alig confidence																		.	.	.
Template Conservation
Template Sequence		K	A	R	G	E	W	S	R	P	R	R	L	A	R	S	E	L	G	A	A	P	E	N	P	R	L	P
Template Known Secondary structure							T	B			S				G	G	G			S					T	T
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions