Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 7 Aligned Residues 376 % Identity 24% Template c2oo6A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase; PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400 Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	P	G	.	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	R	R	G
Query Conservation																.
Alig confidence																.																													.
Template Conservation																																													.
Template Sequence		L	K	V	V	S	V	D	T	L	C	C	D	A	G	W	R	N	Y	H	F	V	K	L	T	T	D	E	G	I	V	G	W	S	E	F	D	E	G	F	G	S	P	G	.	V	T	A	V	I	E	Q	L	G	K	R	L	V	G	A	S	V	M	E	H	E	R	F	F	A	E	A	Y	C	L	T	R	P	A	T	G
Template Known Secondary structure			B												S	S	S										T	T										S	T	T	T		T	T	.													T	T	S	B	T	T													T	G	G	G		S
Template Predicted Secondary structure																																													.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.															.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F	K	A
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	V	S	E	G	I	G	A	I	E	N	A	L	L	D	A	K	A	K	T	L	N	V	P	C	Y	E	L	L	G	G	K	L	R	D	R	V	P	V	Y	W	S	H	C	P	T	W	R	I	N	H	P	K	F	F	G	P	P	V	T	D	L	D	G	V	K	R	T	A	E	E	A	R	E	R	Q	F	R	A
Template Known Secondary structure																							T	T	S	B	G	G	G	G	T	T			S		S								S	T	T							T	T	T	S	S	S				S														T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E	A	A	R	F
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	T	N	I	F	I	H	D	D	G	P	L	H	A	W	R	P	G	F	A	V	P	F	Q	P	A	L	N	V	D	.	.	.	.	.	.	.	.	.	R	K	V	L	R	N	L	R	A	H	L	E	A	L	R	D	G	A	G	P	D	V	E	I	L	L	D	L	N	F	N	A	K	P	E	G	Y	L	K	I
Template Known Secondary structure										S	S	S	S					B	G	G	G	T	B	S			T	T					.	.	.	.	.	.	.	.	.																				S	S	S							T	T		S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190										.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F	A	S
Query Conservation
Alig confidence																			.	.																																													.
Template Conservation																			.	.																																													.
Template Sequence		L	R	E	L	A	D	F	D	L	F	W	V	E	I	D	S	Y	.	.	S	P	Q	G	L	A	Y	V	R	N	H	S	P	H	P	I	S	S	C	E	T	L	F	G	I	R	E	F	K	P	F	F	D	A	N	A	V	D	V	A	I	V	D	T	.	I	W	N	G	V	W	Q	S	M	K	I	A	A	F	A	D
Template Known Secondary structure					T	T	T	S			S							S	.	.											T		S	S						T	T													T	T			S							.
Template Predicted Secondary structure																			.	.																																													.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	E	.	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E	K	L	A	A	K	Y
Query Conservation																																												.
Alig confidence														.	.																													.
Template Conservation														.	.
Template Sequence		A	H	D	I	N	V	A	P	H	N	F	Y	.	.	G	H	L	C	T	M	I	N	A	N	F	A	A	A	V	P	N	L	R	I	M	E	T	D	I	D	R	L	A	W	E	D	E	L	F	T	H	A	P	E	Y	Q	N	G	E	L	I	I	P	D	R	P	G	W	G	T	D	P	V	E	E	A	I	L	A	H
Template Known Secondary structure			T	T									S	.	.																S	S	B								S			T	T	T	G	G	G	B	S							T	T							S	S	B	S	S			B								S
Template Predicted Secondary structure														.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		385	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	E	P	A	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	P	K	V	G	G	L
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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