Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 8 Aligned Residues 368 % Identity 29% Template c2o56D_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative mandelate racemase; PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure													.	.																													.																																						.
Query SS confidence													.	.																													.																																						.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	.	.	C	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	.	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	.
Query Conservation													.	.																													.																																						.
Alig confidence													.	.																													.																																						.
Template Conservation
Template Sequence		M	K	I	T	S	V	D	I	I	D	V	A	N	D	F	K	W	R	P	V	V	V	K	I	N	T	D	E	G	I	S	G	F	G	E	V	G	L	A	Y	G	V	G	A	S	A	G	I	G	M	A	K	D	L	S	A	I	I	I	G	M	D	P	M	N	N	E	A	I	W	E	K	M	L	K	K	T	F	W	G
Template Known Secondary structure																												T	T	S								S		S	S	S	S																	T	T	S		T	T												S	S	S	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
			77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.													.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure		.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F
Query Conservation		.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	G	G	G	I	F	S	A	A	M	S	G	I	D	I	A	L	W	D	I	K	G	K	A	W	G	V	P	L	Y	K	M	L	G	G	K	S	R	E	K	I	R	T	Y	A	S	Q	L	Q	F	G	W	G	D	G	S	D	K	D	M	L	T	E	P	E	Q	Y	A	Q	A	A	L	T	A	V	S	E	G	Y
Template Known Secondary structure		G	G																									T		B					T	T			S		S									G	G	G			S	T	T		T	T					S														T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E	A	A
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	I	K	V	D	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	D	R	H	G	N	W	N	Q	Q	N	L	N	G	P	L	T	D	K	I	L	R	L	G	Y	D	R	M	A	A	I	R	D	A	V	G	P	D	V	D	I	I	A	E	M	H	A	F	T	D	T	T	S	A	I
Template Known Secondary structure		S							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B		T	T	S		B	S		S				S	S																						T	T	S							T	T		S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.																	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	F	G	R	M	I	E	E	L	G	I	F	Y	Y	E	E	P	V	M	P	L	N	P	A	Q	M	K	Q	V	A	D	K	V	N	I	P	L	A	A	G	E	R	I	Y	W	R	W	G	Y	R	P	F	L	E	N	G	S	L	S	V	I	Q	P	D	I	C	T	C	G	G	I	T	E	V	K	K	I	C	D	M
Template Known Secondary structure								G	G	G								S	S		S	S	S													S						T	T													T	T			S						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	.	.	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E	K	L	A
Query Conservation																																													.	.
Alig confidence																.	.																												.	.
Template Conservation																.	.
Template Sequence		A	H	V	Y	D	K	T	V	Q	I	H	V	C	G	.	.	G	P	I	S	T	A	V	A	L	H	M	E	T	A	I	P	N	F	V	I	H	E	L	H	R	Y	A	L	L	E	P	N	T	Q	T	C	K	Y	N	Y	L	P	K	N	G	M	Y	E	V	P	E	L	P	G	I	G	Q	E	L	T	E	E	T	M
Template Known Secondary structure				T	T	T									S	.	.																S	S	B							G	G	G	G	S					T	T	B	S						B	T	T							S	S	B	T	S			B
Template Predicted Secondary structure																.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		382	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Y	P	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	S	P	T
Template Known Secondary structure			T	S
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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