Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 47 Aligned Residues 357 % Identity 20% Template c2hzgB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme/enolase PDBTitle: crystal stucture of predicted mandelate racemase from rhodobacter2 sphaeroides Resolution 2.02 Å

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		1	.	.	.	.	.	.	.	.	10	.	.										.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.							.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	.	.	.	.	.	.	.	.	.	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	S	V	A	S	Y	.	.	.	.	.	.	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D
Query Conservation														.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.														.																					.	.	.	.	.	.
Template Conservation																																				.
Template Sequence		L	K	I	D	A	V	D	L	F	Y	L	S	M	P	E	V	T	D	A	A	D	G	S	Q	D	A	L	L	V	R	V	A	A	G	.	G	H	I	G	W	G	E	C	E	A	A	P	L	P	S	I	A	A	F	V	C	P	K	S	H	G	V	C	R	P	V	S	D	S	V	L	G	Q	R	L	D	G	P	D	D
Template Known Secondary structure			B												S	S			S	S	S		G	G	G										T	.	T								S	S														S	B	T	T	B			G	G	G	G	T	T	T		B		S	S
Template Predicted Secondary structure																																				.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		66	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure													.																																																		.
Query SS confidence													.																																																		.
Query Sequence		I	W	Q	F	F	Y	K	G	A	Y	W	.	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	.	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F
Query Conservation													.																																																		.
Alig confidence													.																																																		.
Template Conservation
Template Sequence		I	A	R	I	A	A	L	V	G	Y	N	S	M	D	L	L	Q	A	P	H	M	L	S	G	I	E	M	A	L	W	D	L	L	G	R	R	L	S	A	P	A	W	A	L	L	G	Y	S	A	S	H	G	K	R	P	Y	A	S	L	L	F	G	D	T	P	Q	E	T	L	E	R	A	R	A	A	R	R	D	G	F
Template Known Secondary structure													T	T	T		T	T																				T	T		B					T	T		S					B										S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	.	.	T	P	I	E
Query Conservation																																																																												.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	V	K	F	G	W	G	P	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	T	V	A	A	D	A	D	Q	I	M	A	A	R	E	G	L	G	P	D	G	D	L	M	V	D	V	G	Q	I	F	G	E	D	V	E	A
Template Known Secondary structure		S						S	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S																		S	S	S							T	T	T	T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.																																.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	.	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		A	A	A	R	L	P	T	L	D	A	A	G	V	L	W	L	E	E	P	F	D	A	G	A	L	A	A	H	A	A	L	A	G	R	G	A	R	V	R	I	A	G	G	E	A	A	H	N	F	H	M	A	Q	H	L	M	D	Y	G	R	I	G	F	I	Q	I	D	C	G	R	I	G	G	L	G	P	A	K	R	V
Template Known Secondary structure				T	T							T	T								S		T	T										T	T			S	S						T	T			S										T	S			S										T	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.																	.
Query SS confidence																																													.																	.
Query Sequence		A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	.	G	Y	S	E	Q	M	L	E	V	F	P	H	N	W	T	F	.	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D	E
Query Conservation																																													.																	.
Alig confidence																			.	.																									.																	.
Template Conservation																			.	.
Template Sequence		A	D	A	A	Q	A	R	G	I	T	Y	V	N	H	T	F	T	.	.	S	H	L	A	L	S	A	S	L	Q	P	F	A	G	L	E	A	D	R	I	C	E	Y	P	A	A	P	Q	Q	L	A	L	D	I	T	G	D	H	I	R	P	D	A	E	G	L	I	R	A	P	E	A	P	G	L	G	L	Q	V	A	A
Template Known Secondary structure									T									S	.	.										G	G	G	T	T		T	T									S								T	B	S	S						T	T	S		B		S		S	S	S	B	T				B
Template Predicted Secondary structure																			.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	A	K	Y	P	Y	E	P	A	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	L	R	R	Y	L	V	E	T	E	I	R
Template Known Secondary structure								B
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions