Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 15 Aligned Residues 372 % Identity 30% Template c2gl5A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dehydratase protein; PDBTitle: crystal structure of putative dehydratase from salmonella thyphimurium Resolution 1.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.									.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure														.	.	.	.	.	.	.	.																										.
Query SS confidence														.	.	.	.	.	.	.	.																										.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	.	.	.	.	.	.	.	.	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	.	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I	W	Q	F	F	Y
Query Conservation														.	.	.	.	.	.	.	.																										.
Alig confidence														.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		L	K	I	T	S	I	E	V	F	D	C	E	L	K	K	R	D	Q	T	M	S	S	Y	N	P	V	L	I	R	V	N	T	D	S	G	L	S	G	I	G	E	V	G	L	A	Y	G	A	G	A	K	A	G	V	G	I	I	R	D	L	A	P	L	I	V	G	E	D	P	L	N	I	E	K	I	W	E	F	F	F
Template Known Secondary structure														G	G	G	T		G	G	G	T	T											T	T	S								S		S	S	S	T	T												G	G	G	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		72	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.											.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	A	Y	W	.	.	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	.	.	.	.	.	.	.	.	.	.	S	I	D	E	A	L	D	D	Y	A	R	H	Q
Query Conservation							.	.																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																																																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	K	T	F	W	G	M	G	G	G	N	V	F	Y	A	G	M	S	A	I	D	I	A	L	W	D	I	K	G	K	Y	L	G	V	P	V	Y	Q	L	L	G	G	K	T	N	E	K	L	R	T	Y	A	S	Q	L	Q	F	G	W	G	D	K	N	H	I	L	V	T	P	E	E	Y	A	E	A	A	R	A	A	L
Template Known Secondary structure			S	S	S	G	G	G	S																									T	S	B					T	T	S		S		S	S								G	G	G			T	T			S				S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	D	G	Y	D	A	I	K	V	D	P	L	E	I	D	.	.	.	.	.	.	.	.	.	.	.	R	N	G	D	D	C	V	F	Q	N	R	N	R	N	Y	S	G	L	L	L	A	D	Q	L	K	M	G	E	A	R	I	A	A	M	R	E	A	M	G	D	D	A	D	I	I	V	E	I	H	S	L	L	G	T
Template Known Secondary structure			T	T		S						S	S	S	B		.	.	.	.	.	.	.	.	.	.	.	T	T	S		B	T	T	T	S	S			G	G	G	G	S																							S	S	S							T	T		S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.												.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	A	I	Q	F	A	K	A	I	E	K	Y	R	I	F	L	Y	E	E	P	I	H	P	L	N	S	D	N	M	Q	K	V	S	R	S	T	T	I	P	I	A	T	G	E	R	S	Y	T	R	W	G	Y	R	E	L	L	E	K	Q	S	I	A	V	A	Q	P	D	L	C	L	C	G	G	I	T	E	G	K	K
Template Known Secondary structure												G	G	G								S	S		S	S													S	S						T	T			T	T									T	T			S						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	.	.	M	G	Y	S	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I	E	F	D
Query Conservation																																													.	.
Alig confidence																				.	.																								.	.
Template Conservation																				.	.
Template Sequence		I	C	D	Y	A	N	I	Y	D	T	T	V	Q	V	H	V	C	G	.	.	G	P	V	S	T	V	A	A	L	H	M	E	T	A	I	P	N	F	I	I	H	E	H	H	T	N	A	M	K	A	S	I	R	E	L	C	T	H	D	Y	Q	P	E	N	G	Y	Y	V	A	P	E	Q	P	G	L	G	Q	E	L	N
Template Known Secondary structure								T	T	T									S	.	.	S															T	T	B							T	T	T	T						T	T	B	S	S					B	T	T							S	S	B	T	S			B
Template Predicted Secondary structure																				.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.			.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		378	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	A	A	K	Y	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	V	V	K	E	Y	L
Template Known Secondary structure						T	T	T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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