Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 41 Aligned Residues 344 % Identity 25% Template c2gdqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yitf; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from bacillus subtilis at 1.8 a resolution Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.															.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																																																					.	.
Template Sequence		V	K	I	V	R	I	E	T	F	P	L	F	H	R	L	E	K	P	Y	G	D	A	N	G	F	K	R	Y	R	T	C	Y	L	I	R	I	I	T	E	S	G	I	D	G	W	G	E	C	V	D	W	.	.	L	P	A	L	H	V	G	F	T	K	R	I	I	P	F	L	L	G	K	Q	A	G	S	R	L	S	L
Template Known Secondary structure			B																				T	T																T	T	S									S		.	.											T						T	T	S	B	T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																																															.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.
Query Sequence		W	Q	F	F	Y	K	G	A	Y	W	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	S	.	.	.	.	.	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L
Query Conservation																																																															.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		V	R	T	I	Q	K	W	H	.	.	.	.	.	.	.	.	Q	R	A	A	S	A	V	S	M	A	L	T	E	I	A	A	K	A	A	D	C	S	V	C	E	L	W	G	G	R	Y	R	E	E	I	P	V	Y	A	S	F	Q	S	Y	S	D	S	P	Q	W	I	S	R	S	V	S	N	V	E	A	Q	L	K	K
Template Known Secondary structure							T	T		.	.	.	.	.	.	.	.																			T	T	S	B					T	T			S		S										B		B	S	S	T	T															T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.									90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	I	E
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	E	Q	I	K	V	K	I	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	F	K	E	D	V	R	H	I	N	A	L	Q	H	T	A	G	S	S	I	T	M	I	L	D	A	N	Q	S	Y	D	A	A	A
Template Known Secondary structure		T									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																		T	T	S							T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.																																			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		A	A	R	F	G	K	S	I	E	D	Y	.	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		A	F	K	W	E	R	Y	F	S	E	W	T	N	I	G	W	L	E	E	P	L	P	F	D	Q	P	Q	D	Y	A	M	L	R	S	R	L	S	V	P	V	A	G	G	E	N	M	K	G	P	A	Q	Y	V	P	L	L	S	Q	R	C	L	D	I	I	Q	P	D	V	M	H	V	N	G	I	D	E	F	R	D	C
Template Known Secondary structure				T	T					T	T		S									S		S	S										T	T		S	S						T	T			S										T	T			S						T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.							.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.
Query Sequence		A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	E	Q	M	L	E	V	F	P	H	N	.	.	.	.	.	.	W	T	F	D	N	G	Y	M	H	P	G	D	K	P	G	L	G	I
Query Conservation																																																										.	.	.	.	.	.
Alig confidence																			.	.																																						.	.	.	.	.	.
Template Conservation																			.	.
Template Sequence		L	Q	L	A	R	Y	F	G	V	R	A	S	A	H	A	Y	D	.	.	G	S	L	S	R	L	Y	A	L	F	A	Q	A	C	L	P	P	W	S	K	M	K	N	D	H	I	E	P	I	E	W	D	V	M	E	N	P	F	T	D	L	V	S	L	Q	P	S	K	G	M	V	H	I	P	K	G	K	G	I	G	T
Template Known Secondary structure									T								T	T	.	.		S												T	S			S	S	S		T	T	S		S								S	S		G	G	G	G	S	B					B	T	T							S	S	B	T	S	S
Template Predicted Secondary structure																			.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	D	E	K	L	A	A	K	Y	P	Y	E	P	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	N	M	E	I	V	N	R	Y	K	W	D	G	S	A
Template Known Secondary structure			B								T	B			S
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions