Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 74 Aligned Residues 345 % Identity 19% Template c2dw7G_ PDB info PDB header:lyase Chain: G: PDB Molecule:bll6730 protein; PDBTitle: crystal structure of d-tartrate dehydratase from2 bradyrhizobium japonicum complexed with mg++ and meso-3 tartrate Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.													.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.																											.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.																											.	.	.	.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	.	.	.	.	.	.	.	.	.	.	.	.	P	G	R	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	.	.	.	T	L	N	G	R	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	.	.	.	.	.
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.																											.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.																											.	.	.	.	.
Template Conservation
Template Sequence		V	R	I	V	D	V	R	E	I	T	K	P	I	S	S	P	I	R	N	A	Y	I	D	F	T	K	M	T	T	S	L	V	A	V	V	T	D	V	V	R	E	G	K	R	V	V	G	Y	G	F	N	S	N	G	R	Y	G	Q	G	G	L	I	R	E	R	F	A	S	R	I	L	E	A	D	P	K	K	L	L	N
Template Known Secondary structure																	S		B		S	S		B		T	T															T	T											T	T	S										T							T	S		G	G	G	S	B
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
							61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.					.	.
Predicted Secondary structure		.	.	.	.	.																																																						.	.	.	.													.	.	.	.
Query SS confidence		.	.	.	.	.																																																						.	.	.	.													.	.	.	.
Query Sequence		.	.	.	.	.	H	R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	.	.	.	.	R	E	G	V	M	V	Y	C	H	T	T	G	.	.	.	.	H	S
Query Conservation		.	.	.	.	.																																																						.	.	.	.													.	.	.	.
Alig confidence		.	.	.	.	.																																																						.	.	.	.													.	.	.	.
Template Conservation
Template Sequence		E	A	G	D	N	L	D	P	D	K	V	W	A	A	M	M	I	N	E	K	P	G	G	H	G	E	R	S	V	A	V	G	T	I	D	M	A	V	W	D	A	V	A	K	I	A	G	K	P	L	F	R	L	L	A	E	R	H	G	V	K	A	N	P	R	V	F	V	Y	A	A	G	G	Y	Y	Y	P	G	K	G
Template Known Secondary structure		S	S	S	S	S	B										T	T	T			S	S			S	S																				T	T	S	B										T	S															B		T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	M	L	R	G	E	M	R	G	Y	L	D	R	G	Y	N	V	V	K	M	K	I	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	I	E	E	D	R	M	R	I	E	A	V	L	E	E	I	G	K	D	A
Template Known Secondary structure															T	T		S							S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																	T	T	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.																																			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.
Predicted Secondary structure																																																																												.	.	.	.
Query SS confidence																																																																												.	.	.	.
Query Sequence		H	L	L	H	D	M	H	H	R	L	T	P	I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	E	D	P	T	P	A	E	N	Q	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	.	.	.	.	D	Y
Query Conservation																																																																												.	.	.	.
Alig confidence																																																																												.	.	.	.
Template Conservation
Template Sequence		Q	L	A	V	D	A	N	G	R	F	N	L	E	T	G	I	A	Y	A	K	M	L	R	D	Y	P	L	F	W	Y	E	E	V	G	D	P	L	D	Y	A	L	Q	A	A	L	A	E	F	Y	P	G	P	M	A	T	G	E	N	L	F	S	H	Q	D	A	R	N	L	L	R	Y	G	G	M	R	P	D	R	D	W
Template Known Secondary structure								T	T															T	T	S			S						S		T	T									T	T	T			S						T	T			S											S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y	S	E	Q	M	L	E	V	F	P	H	N	W	T	F	D	N	G	Y
Query Conservation
Alig confidence																																				.	.	.	.																													.
Template Conservation																																				.	.	.	.																													.
Template Sequence		L	Q	F	D	C	A	L	S	Y	G	L	C	E	Y	Q	R	T	L	E	V	L	K	T	H	G	W	S	P	S	R	C	I	P	H	.	.	.	.	G	G	H	Q	M	S	L	N	I	A	A	G	L	G	L	G	G	N	E	S	Y	P	D	L	F	Q	P	Y	.	G	G	F	P	D	G	V	R	V	E	N	G	H
Template Known Secondary structure						G	G	G	T	T															T	T			G	G	G	B			S	.	.	.	.	S													T		S						S	S	S	S	T	T	S	.	S	S			T	T					S	S
Template Predicted Secondary structure																																				.	.	.	.																													.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	P	G	D	K	P	G	L	G	I	E	F	D	E	K	L	A	A	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	M	P	D	L	P	G	I	G	F	E	G	K	S	D	L	Y	K	E	M
Template Known Secondary structure								S	B	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions