Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 105 Aligned Residues 300 % Identity 17% Template c1kkoB_ PDB info PDB header:lyase Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase; PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase Resolution 1.33 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.												40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	.	.	.	.	.	.	.	.	.	.	.	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	R	R	G	P	V	T	M	S	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation																																																																						.
Template Sequence		C	V	S	V	Q	L	I	L	E	N	G	A	V	A	V	G	D	C	A	A	V	Q	Y	S	G	A	G	G	R	D	P	L	F	L	A	E	H	F	I	P	F	L	N	D	H	I	K	P	L	L	E	G	R	D	V	D	A	F	L	P	N	A	R	F	F	D	K	L	.	R	I	D	G	N	L	L	H	T	A	V
Template Known Secondary structure										T	T	S											T	T	T	T	S	T	T																		T					T	T		B		S		S											.			T	T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.																.	.	.	.
Query SS confidence																													.	.	.	.	.																.	.	.	.
Query Sequence		I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	.	.	.	.	.	S	R	E	G	V	M	V	Y	C	H	T	T	G	H	S	.	.	.	.	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K
Query Conservation																													.	.	.	.	.																.	.	.	.
Alig confidence																													.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		R	Y	G	L	S	Q	A	L	L	D	A	T	A	L	A	S	G	R	L	K	T	E	V	V	C	D	E	W	Q	L	P	C	V	P	E	A	I	P	L	F	G	Q	S	G	D	D	R	Y	I	A	V	D	K	X	I	L	K	G	V	D	V	L	P	H	A	L	I	N	N	V	E	E	K	L	G	F	K	G	E	K
Template Known Secondary structure																		T												T															T	T		T	T									T	T		S					T	T										T	T	S
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																																	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.
Query Sequence		T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	M	H	H	R	L	T	P	.	.	.	.	.	.	I	E	A	A	R	F	G	K	S	I	E
Query Conservation																																																																	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	V	R	W	L	S	D	R	I	L	S	L	R	S	S	P	R	Y	H	P	T	L	H	I	D	V	Y	G	T	I	G	L	I	F	D	X	D	P	V	R	C	A	E	Y	I	A	S	L	E
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															S	S	T	T										T	T						T	T	T												T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		211	.																													.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		231	.	.	.				.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.						.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.												.	.	.	.											.	.	.	.	.
Query SS confidence						.	.	.												.	.	.	.											.	.	.	.	.
Query Sequence		D	Y	R	M	.	.	.	F	W	M	E	D	P	T	P	A	E	N	.	.	.	.	Q	E	C	F	R	L	I	R	Q	H	.	.	.	.	.	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R
Query Conservation						.	.	.												.	.	.	.											.	.	.	.	.
Alig confidence						.	.	.												.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence		K	E	A	Q	G	L	P	L	Y	I	E	G	P	V	D	A	G	N	K	P	D	Q	I	R	X	L	T	A	I	T	K	E	L	T	R	L	G	S	G	V	K	I	V	A	D	E	W	C	N	T	Y	Q	D	I	V	D	F	T	D	A	G	S	C	H	X	V	Q	I	K	T	P	D	L	G	G	I	H	N	I	V
Template Known Secondary structure		G	G	G	T	T	S											S	S																			T									T	T			S										T	T			S						G	G	G	G	S	S	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C	M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	V	L	Y	C	N	K	H	G	X	E	A	Y	Q	G	G	T	C	N	E	T	E	I	S	A	R	T	C	V	H	V	A	L	A	A	R	P	X	R	X	L	I	K	P	G	X
Template Known Secondary structure										T	T									T	T	S																		S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions