Job Description P38104 Confidence 100.00% Date Thu Jan 5 11:57:58 GMT 2012 Rank 100 Aligned Residues 311 % Identity 17% Template c1kczA_ PDB info PDB header:lyase Chain: A: PDB Molecule:beta-methylaspartase; PDBTitle: crystal structure of beta-methylaspartase from clostridium2 tetanomorphum. mg-complex. Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.																																				.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Query Sequence		M	K	I	V	K	A	E	V	F	V	T	C	P	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	V	T	L	K	I	T	T	E	D	G	I	T	G	L	G	D	A	T	L	N	G	R	.	.	.	.	.	.
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		M	K	I	V	D	V	L	C	T	P	G	L	T	G	F	Y	F	D	D	Q	R	A	I	K	K	G	A	G	H	D	G	F	T	Y	T	G	S	T	V	T	E	G	F	T	Q	V	R	Q	K	G	E	S	I	S	V	L	L	V	L	E	D	G	Q	V	A	H	G	D	C	A	A	V	Q	Y	S	G	A	G	G	R
Template Known Secondary structure			B												S	S										T	T					T	T				S				S	T	T		S	S	S														T	T	S											T	T	T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
							40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	E	L	S	V	A	S	Y	L	Q	D	H	L	C	P	Q	L	I	G	R	D	A	H	R	I	E	D	I	W	Q	F	F	Y	K	G	A	Y	W	R	R	G	P	V	T	M	S	A	I	S	A	V	D	M	A	L	W	D	I	K	A	K	A	A	N	M	P	L	Y	Q	L	L	G	G	A	S	R
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																						.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		D	P	L	F	L	A	K	D	F	I	P	V	I	E	K	E	I	A	P	K	L	I	G	R	E	I	T	N	F	K	P	M	A	E	E	F	D	K	M	T	V	N	.	.	.	.	.	G	N	R	L	H	T	A	I	R	Y	G	I	T	Q	A	I	L	D	A	V	A	K	T	R	K	V	T	M	A	E	V	I	R
Template Known Secondary structure			S															T					T	T		B																	T	.	.	.	.	.	T																								T	S
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.						.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		115										.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																											.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.																											.	.	.	.
Query Sequence		E	.	.	.	.	.	.	.	.	.	G	V	M	V	Y	C	H	T	T	G	H	S	I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	.	.	.	.	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q
Query Conservation			.	.	.	.	.	.	.	.	.																											.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																											.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	Y	N	P	G	A	E	I	N	A	V	P	V	F	A	Q	S	G	D	D	R	Y	D	N	V	D	K	M	I	I	K	E	A	D	V	L	P	H	A	L	I	N	N	V	E	E	K	L	G	L	K	G	E	K	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	T	T													T	T		T	T									T	T		S																T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.							.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.					.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.																									.	.	.										.	.	.	.
Query SS confidence																																	.	.	.	.	.	.																									.	.	.										.	.	.	.
Query Sequence		L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E	H	L	L	H	D	.	.	.	.	.	.	M	H	H	R	L	T	P	I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	.	.	.	M	E	D	P	T	P	A	E	N	.	.	.	.	Q	E	C
Query Conservation																																	.	.	.	.	.	.																									.	.	.										.	.	.	.
Alig confidence		.	.	.	.	.																											.	.	.	.	.	.																									.	.	.										.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	E	Y	V	K	W	L	R	D	R	I	I	K	L	R	V	R	E	D	Y	A	P	I	F	H	I	D	V	Y	G	T	I	G	A	A	F	D	V	D	I	K	A	M	A	D	Y	I	Q	T	L	A	E	A	A	K	P	F	H	L	R	I	E	G	P	M	D	V	E	D	R	Q	K	Q	M	E	A
Template Known Secondary structure		.	.	.	.	.															S	S	T	T										T	T						T	T	T																	T	T	S							S	B			S	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		249	250	.	.	.	.	.						.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		F	R	L	I	R	Q	H	.	.	.	.	.	T	V	T	P	I	A	V	G	E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T	T	L	T	H	A	G	G	I	T	G	M	R	R	I	A	D	F	A	S	L	Y	Q	V	R	T	G	S	H	G	P	S	D	L	S	P	V	C
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.																																																											.
Template Conservation																																																																								.
Template Sequence		M	R	D	L	R	A	E	L	D	G	R	G	V	D	A	E	L	V	A	D	E	W	C	N	T	V	E	D	V	K	F	F	T	D	N	K	A	G	H	M	V	Q	I	K	T	P	D	L	G	G	V	N	N	I	A	D	A	I	M	Y	C	K	A	N	G	M	G	A	Y	C	.	G	G	T	N	E	T	N	R	S
Template Known Secondary structure													T									T	T			S										T	T		S	S						T	G	G	G	S	S	T													T	T						.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	A	A	L	H	F	D	L	W	V	P	N	F	G	V	Q	E	Y	M	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	V	T	T	N	I	G	M	A	C	G	A	R	Q	V	L	A	K	P	G	M
Template Known Secondary structure													T		S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions