Job Description P38104 Confidence 98.34% Date Thu Jan 5 11:57:58 GMT 2012 Rank 169 Aligned Residues 149 % Identity 15% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	E	A	L	D	D	Y	A	R	H	Q	E	L	G	F	K	A	I	R	V	Q	C	G	I	P	G	M	K	T	T	Y	G	M	S	K	G	K	G	L	A	Y	E	P	A	T	K	G	Q	W	P	E	E	Q	L	W	S	T	E	K	Y	L	D	F	M	P	K	L	F	D	A	V	R	N	K	F	G	F	N	E
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.																						.
Template Conservation																											.	.	.	.	.	.	.	.	.																						.
Template Sequence		Q	Q	F	Y	V	D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	.	.	.	.	.	.	.	.	.	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	.	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C
Template Known Secondary structure															T	T		S								T	.	.	.	.	.	.	.	.	.	T									T	T	T					S	T	T	S	S	.	S																				T	T	T	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.										.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		208	.	210	.	.	.								.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.												.	.	240	.	.	.	.	.	.							.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query Sequence		H	L	L	H	D	M	.	.	.	.	.	.	.	H	H	R	L	T	P	I	E	A	A	R	F	G	K	S	I	E	D	Y	R	M	F	W	M	.	.	.	.	.	.	.	.	.	.	.	E	D	P	T	P	A	E	N	Q	.	.	.	.	.	.	E	C	F	R	L	I	R	Q	H	T	V	T	P	I	A	V	G
Query Conservation								.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	K	K	P	V	L	G	V
Template Known Secondary structure												S	S		T	T	S			T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	F	N	S	I	W	D	C	K	Q	L	I	E	E	Q	L	I	D	Y	I	R	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	Y	T	D	P	E	K	M	I	E	I	V	T	K	G	Y	A	D	I	I	G	C
Template Known Secondary structure		S														T	T	S		S	B
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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