 |
Job Description | P14497 | Confidence | 99.31% | Date | Thu Jan 5 11:34:04 GMT 2012 |
Rank | 82 | Aligned Residues | 89 |
% Identity | 15% | Template | c1zypB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:alkyl hydroperoxide reductase subunit f; |
PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf
|
Resolution | 2.40 Å |
|
 |
  |   |
131 | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | |
. | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | Q | Q | R | Q | A | I | A | K | L | A | E | H | Y | G | I | M | F | F | Y | R | G | Q | D | P | I | D | G | Q | L | A | Q | V | I | N | G | F | R | D | T | Y | . |
G | L | S | V | I | P | V | S | V | D | G | V | I | N | P | L | L | P | D | S | R | T | D | Q | G | Q | A | Q | R | L | G | V | K | Y | F | P | A | M |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |
|
|   |   |   |
|
|
|   |
|   |   |   |   |
|
|   |
|   |   |   |   |
|   |
|   |   |
|
|   |   |
| . |
|   |   |
|
|   |
|
|   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |
|
|   |   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|
|   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|   |
|   |   |
|
|   |
|
Template Sequence |   |
Q | S | L | L | E | Q | I | R | D | I | D | G | D | F | E | F | E | T | Y | Y | S | L | S | C | H | N | C | P | D | V | V | Q | A | L | N | L | M | A | V | L | N | P | R | I | K | H | T | A | I | D | G | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | F | Q | N | E | I | T | E | R | N | V | M | G | V | P | A | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T |
|
| S |
|  |  |  |  |  |  |  |
| T | T |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
| T | T |  |  |  |  |  |  |  | T | T | . | . | . | . | . | . | . | . | . | . | . | T |
|  |  |  |  |  |  | T | T |
|
| S | S |
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
106 | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . |
  |
  |   |
210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | L | V | D | P | K | Q | G | S | V | R | P | L | S | Y | G | F | I | S | Q | D | D | L | A | K | Q | F |
Query Conservation |   |
  |
|
|   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|
|
|   |   |
|
|
Alig confidence |   |
|
| . | . | . | . |
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   | . | . | . | . |   |   |   |   | . | . |   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|
Template Sequence |   |
F | V | . |
. |
. |
. |
N | G | K | E | . |
. |
F | G | Q | G | R | M | T | L | T | E | I | V | A | K | V |
Template Known Secondary structure |   |
 |  | . | . | . | . | T | T |  |  | . | . |  |  |  | S |
|
|
|  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  | . | . | . | . |
|
|  |  | . | . |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
175 | . | |
|
|
|
. | . | . | 180 | |
|
. | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|