|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 50 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | S | I | F | G | V | F | D | I | K | T | D | A | V | E | L | R | K | K | A | L | E | L | S | R | L | M | R | H | R | G | P | D | W | S | G | I | Y | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | D | N | A | I | L | A | H | E | R | L | S | I |
Query Conservation |   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
|
|
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|   |
|   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|   |
|
|
Template Sequence |   |
C | G | I | V | G | I | A | G | V | M | P | V | . |
. |
. |
. |
N | Q | S | I | Y | D | A | L | T | V | L | Q | H | R | G | Q | D | A | A | G | I | I | T | I | D | A | N | N | C | F | R | L | R | K | A | N | G | L | V | S | D | V | F | E | A | R | H | M | Q | R | L | Q | G | N | M | G | I | G | H | V | R | Y | P | T |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
| S | S |
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  | T | G | G | G |
|
| S |  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  | S |
|  |  |  |  |
|
|  |  |  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |
|
| B |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | |
|
|
|
. | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |
  |
  |   |
54 | . | . | . | . | |
|
. | 60 | . | . | . | . | . | . | . | |
. | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
|
. | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |
|
|
|
| . | . |
|
|
|
|  |  |
|
|
| . |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
V | D | V | N | A | . |
. |
G | A | Q | P | L | Y | N | Q | Q | . |
K | T | H | V | L | A | V | N | G | E | I | Y | N | H | Q | A | L | R | A | E | Y | . |
. |
G | D | R | Y | Q | F | Q | T | G | S | D | C | E | V | I | L | A | L | Y | Q | E | K | G | P | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |
|   |   |   | . | . |
|   |
|
|   |   |   |   |   | . |   |   |   |   |
|
|   |
|
|
|
|
|
|   |   |
|
|   |   |   |
| . | . |   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|
|   |   |
|   |   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |
|   |   |   |   |   |
|   |
|
|
|   |   |   |   |   |
|   |   |   |   |   |
|
|
|   |
|   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
Template Sequence |   |
A | G | S | S | S | A | S | E | A | Q | P | F | Y | V | N | S | P | Y | G | I | T | L | A | H | N | G | N | L | T | N | A | H | E | L | R | K | K | L | F | E | E | K | R | R | H | I | N | T | T | S | D | S | E | I | L | L | N | I | F | A | S | E | L | D | N | F | R | H | Y | P | L | E | A | D | N | I | F | A | A | I |
Template Known Secondary structure |   |
T | T | B |
| T | T | S |
|
| S |
|  |  |  |
| S | S | S |
|  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S | S | S |
|
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
  |
  |   |
|
|
114 | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | |
|
|
|
. | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | |
. | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
| . |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
F | L | D | D | L | Q | G | M | F | A | F | A | L | Y | D | S | E | K | D | A | Y | L | I | G | R | D | H | L | G | I | I | P | L | Y | M | G | Y | . |
. |
. |
. |
D | E | H | G | Q | L | Y | V | A | S | E | M | K | A | L | V | P | V | C | R | T | . |
I | K | E | F | P | A | G | S | Y | L | W | S | Q | D | G |
Query Conservation |   |
. | . |   |
|   |   |
|   |
|   |
|
|
|   |
|   |
|   |   |   |   |   |
|   |
|
|
|
|   |   |
|   |
|
|
|
|
|   |   | . | . | . | . |   |   |   |
|   |   |   |
|
|
|
|   |
|
|
|   |   |   |   |   |   | . |
|   |   |
|
|
|
|   |   |
|   |   |   |   |   |
Alig confidence |   |
. | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |   | . |   |   |   |   |
|   |   |   |
|
|   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |
|   |   |   |
Template Sequence |   |
A | A | T | N | R | L | I | R | G | A | Y | A | C | V | A | M | I | . |
I | G | H | G | M | V | A | F | R | D | P | N | G | I | R | P | L | V | L | G | K | R | D | I | D | E | N | R | T | E | Y | M | V | A | S | E | S | V | A | L | D | T | L | G | F | D | F | L | R | D | V | A | P | G | E | A | I | Y | I | T | E | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  | . | T | T | T |  |  |  |  |  |  |
| T | T |
|
| S |
|
|  |  |  |  |  |  |
| S | S | S |
|  |  |  |  |  |  | S | S | T |  |  |  |  |  |  | T |
|  |  |  |  |  |
|
| T | T |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
157 | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | |
. | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . |
  |
  |   |
187 | . | . | 190 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | R | S | Y | Y | H | R | D | W | F | D |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
G | Q | L | F | T | R | Q | C | A | D | N | P |
Template Known Secondary structure |   |
|
|  |  |  |  |  |
| S | S | S |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
236 | . | . | . | 240 | . | . | . | . | . | . | . |
  |