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Job DescriptionP22106
Confidence100.00%DateWed Jan 25 15:20:42 GMT 2012
Rank2Aligned Residues413
% Identity22%Templatec1q15A_
PDB info PDB header:biosynthetic proteinChain: A: PDB Molecule:cara; PDBTitle: carbapenam synthetase
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80......... 90.........100.......
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Query Sequence  RHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYG. DRYQFQTGSDCEVILALY
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Template Sequence  IQRDFDGKGE. . . . . . ALSNGYLFIEQ. NGHYQKCEMERG. . TAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLF
Template Known Secondary structure  TTS
......TTT.T


SSS..

S
TTT
GGGGG

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   1920........ .30......... 40.........50. ........60.........70.........80.........
 
   108.110.........120.........130.........140.........150.........160......
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Query Sequence  QEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALV. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TRLGANALALAEGDFCFFIDE. PNGELTVITESRGFSPVHVVQ. . GKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLM
Template Known Secondary structure 
GGGGGG

SS
.TTS

SSSSS

..SSSS

TTSS
B

TT
S
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   90.........100.........110 .........120.........130. ........140.........150.........160......
 
   167..170.........180...... ...190.........200.........210.........220.........230.....
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Query Sequence  . . . . . PVCRTIKEFPAGSYLWSQDG. . . . . . EIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLS
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Template Sequence  RADTYTPVKNAQRLKPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLS
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TT

SBTT

SS
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S
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S

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   167..170.........180.........190.........200.........210.........220.........230.........240......
 
   236...240.........250.........260.........270.........280.........290.........300.........310.....
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Query Sequence  GGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYH
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Template Sequence  GGLDSSLVTALASRHFKK. . . . . . . . . . . . . . LNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYY
Template Known Secondary structure  SSTTT
S..............TTB

T

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   247..250.........260.... .....270.........280.........290.........300.........310..
 
   316...320.........330.........340.........350........ .360.........370.........380.........390....
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Query Sequence  IETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGY. LYFHKAPNAKELHEETVRKLLALHMYDCARANKAMS
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Template Sequence  NEIFDGLSAEIQSGLFNVYRQA. QGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTR. . . . WTGEFATHGAS
Template Known Secondary structure 



.BTTBS

TTTTTS
TT


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   313......320.........330.... .....340.........350.........360.........370...... ...380.......
 
   395....400.........410.........420.........430........ .440......... 450.........460....
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Query Sequence  AWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFE. . AYLPASVAWRQ. KEQFSDGVGYSWIDT. . . . . . .
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Template Sequence  CYGIDIRHPFWSHSLISLCHALHPDYKI. . FDNEVKNILREYADSLQLLPKDIVWRSVNQAFANVLGSTVDNYQTKSRFT
Template Known Secondary structure  TT

TT

TB
GGGT..TTSTS
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   388.390.........400.........410..... ....420.........430.........440.........450.........460.....
 
   465....470....
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Query Sequence  . . . LKEVAAQQVS
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Template Sequence  YRVYQAFLRGRLS
Template Known Secondary structure  TTSS
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   475....480.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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