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Job DescriptionP22106
Confidence100.00%DateWed Jan 25 15:20:42 GMT 2012
Rank1Aligned Residues495
% Identity100%Templatec1ct9D_
PDB info PDB header:ligaseChain: D: PDB Molecule:asparagine synthetase b; PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  CSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH
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Template Sequence  ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH
Template Known Secondary structure 
S

S
TTGGG

S
SS

SSSTTT

SS
SSS
TT
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  QALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASE
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Template Sequence  QALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASE
Template Known Secondary structure  TTT



S

TTTTTTGGG

TTTT
TT
SS


TT

SS
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  MKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSS
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Template Sequence  MKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSS
Template Known Secondary structure  GGGTTTT
S

TTTTTT



GGGSGGGTTT



TT

SS


SS
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  IISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDV
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Template Sequence  IISAITKKYAA. . . . . . . . . . . . . . QLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDV
Template Known Secondary structure 

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STT
T


T


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   241........250. ........260.........270.........280.........290.........300......
 
   322.......330.........340.........350.........360.........370.........380.........390.........400.
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Query Sequence  TTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEAR
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Template Sequence  TTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEAR
Template Known Secondary structure  T



TTT
SGGGGG


GGGTTTT
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   321........330.........340.........350.........360.........370.........380.........390.........400
 
   402.......410.........420.........430.........440.........450.........460.........470.........480.
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Query Sequence  VPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETA
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Template Sequence  VPFLDKKFLDVAMRINPQDKM. . CGKMEKHILRECFEAYLPASVAWRQD. . . . . GVGYSWIDTLKEVAAQQVSDQQLETA
Template Known Secondary structure 
GGG
S
GGGG
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TTGGGS



.....
S
S
T
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   401........410.........420. ........430.........440....... ..450.........460.........470...
 
   482.......490.........500.........510.......
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Query Sequence  RFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG
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Template Conservation             

       
               
Template Sequence  RFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPG
Template Known Secondary structure 

SS


S

SS

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   481........490.........500.........510......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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