Job Description P40191 Confidence 100.00% Date Thu Jan 5 12:01:12 GMT 2012 Rank 6 Aligned Residues 237 % Identity 19% Template c3rm5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast Resolution 2.68 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	D	I	V	A	V	Q	S	Q	V	V	Y	G	S	V	G	N	S	I	A	V	P	A	I	K	Q	N	G	L	N	V	F	A	V	P	T	V	L	L	S	N	T	P	H	Y	D	T	F	Y	G	G	A	I	P	D	E	W	F	S	G	Y	L	R	A	L	Q	E	R	D	A	L	R	Q	L	R	A	V	T	T
Query Conservation
Alig confidence																																														.																								.	.	.
Template Conservation																																														.																								.	.	.
Template Sequence		L	P	T	V	L	S	I	A	G	T	D	P	S	G	G	A	G	I	E	A	D	V	K	T	I	T	A	H	R	C	Y	A	M	T	C	I	T	A	L	N	A	Q	T	P	.	V	K	V	Y	S	I	N	N	T	P	K	E	V	V	F	Q	T	L	E	S	N	L	K	.	.	.	D	M	K	C	N	V	I	K	T
Template Known Secondary structure													T	T	S	S	S												T	T								S	B						S	.	S							B																.	.	.		S			S
Template Predicted Secondary structure																																														.																								.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		G	Y	M	G	T	A	S	Q	I	K	I	L	A	E	W	L	T	A	L	R	K	D	H	P	D	L	L	I	M	V	D	P	V	I	G	D	I	D	S	G	I	Y	V	K	P	D	L	P	E	A	Y	R	Q	Y	L	L	P	L	A	Q	G	I	T	P	N	I	F	E	L	E	I	L	T	G	.	.	K	N	C	R
Query Conservation																																																																												.	.
Alig confidence																							.	.	.													.	.	.	.	.	.	.	.																															.	.
Template Conservation																							.	.	.													.	.	.	.	.	.	.	.
Template Sequence		G	M	L	T	A	A	A	I	E	V	L	H	E	K	L	L	Q	L	G	E	N	.	.	.	R	P	K	L	V	V	D	P	V	L	V	A	.	.	.	.	.	.	.	.	K	D	I	V	S	L	I	T	E	K	V	A	P	F	A	D	I	L	T	P	N	I	P	E	C	Y	K	L	L	G	E	E	R	K	V	N
Template Known Secondary structure			S																	G	G	G	.	.	.													.	.	.	.	.	.	.	.											T	G	G	G		S					B								T	T	S					S
Template Predicted Secondary structure																							.	.	.													.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.									.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																	.																																								.
Query SS confidence																	.																																								.
Query Sequence		D	L	D	S	A	I	A	A	A	K	S	L	L	S	D	.	T	L	K	W	V	V	V	T	S	A	S	G	N	E	E	N	Q	E	M	Q	V	V	V	V	T	A	D	S	V	N	V	I	S	H	S	R	V	K	T	.	D	L	K	G	T	G	D	L	F	C	A	Q	L	I	S	G	L	L	K	G	K	A	L	T
Query Conservation																	.																																								.
Alig confidence																	.													.	.	.	.	.																							.
Template Conservation																														.	.	.	.	.
Template Sequence		G	L	Q	D	I	F	Q	I	A	K	D	L	A	K	I	T	K	C	S	N	I	L	V	K	G	G	H	I	.	.	.	.	.	T	D	V	L	F	L	G	A	E	Q	K	F	I	I	F	K	G	N	F	V	N	T	T	H	T	H	G	T	G	C	T	L	A	S	A	I	A	S	N	L	A	R	G	Y	S	L	P
Template Known Secondary structure		S																		S										.	.	.	.	.							T	T	T	T													S			B	T																T
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	V	H	R	A	G	L	R	V	L	E	V	M	R	Y	T	Q	Q	H	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	V	Y	G	G	I	E	Y	V	Q	N	A	V	A	I	G	C	D	V	T
Template Known Secondary structure																						S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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