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Job DescriptionP40191
Confidence99.59%DateThu Jan 5 12:01:12 GMT 2012
Rank54Aligned Residues235
% Identity15%Templatec3kd6B_
PDB info PDB header:transferaseChain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40......... 50.........60.........70.........80......
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Query Sequence  QADIVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAV. . . . . . . . PTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDAL
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Template Sequence  PIRXVGVVGSD. FG. . . . KEHFDLLHAKNIDTRGIQVIEDGKTFRWAGRYHYDXNTRDTLDTQLNVFAEFDPHVPQY. . Y
Template Known Secondary structure 

TT.S
....TT
TT



TTSS

GGGTT





GG..G
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   43......50... .. ....60.........70.........80.........90.........100.........110.... .
 
   87..90.........100.........110.........120.........130.........140.........150.........160......
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Query Sequence  RQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEIL
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Template Sequence  RDSKFVCLGNID. . . . PELQLKVLDQIDDP. . KLVVCDTXNFWI. . . . . . . . . EGKPEELKKVLARVDVFIVNDSEARLL
Template Known Secondary structure  TT
S
SS
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..S

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TT
S
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   116...120....... ..130.........140. ........150... ......160.........170.........180
 
   167..170.........180.........190.........200.........210.........220...... ...230.........240.....
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Query Sequence  TGKNCRDLDSAIAAAKSLLSDTLKWVVVTSASGNEENQEMQVVVVTADSVNVISHSRVKT. DLKGTGDLFCAQLISGLLK
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Template Sequence  SGDP. . . . . NLVKTARIIREXGPKTLIIKKGE. . . . . . HGALLFTDNGIFAAPAFPLESIYDPTGAGDTFAGGFIGHLAR
Template Known Secondary structure  S
S.....
TTS
S
TT......S
TT


TT


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TT
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   181... .....190.........200....... ..210.........220.........230.........240.........
 
   246... 250.........260.........270.........280..
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Query Sequence  GKAL. . . . . TDAVHRAGLRVLEVMRYTQQHESDELILPPLAE
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Template Sequence  CGNTSEAEXRKAVLYGSAXASFCVEQFGPYRYNDLDLLEVDD
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STTSSTTGGGGT

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   250.........260.........270.........280.........290.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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