Job Description P40191 Confidence 99.60% Date Thu Jan 5 12:01:12 GMT 2012 Rank 53 Aligned Residues 199 % Identity 19% Template c3k5wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori Resolution 2.60 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																											.																																																						.
Query SS confidence																											.																																																						.
Query Sequence		D	I	V	A	V	Q	S	Q	V	V	Y	G	S	V	G	N	S	I	A	V	P	A	I	K	Q	.	N	G	L	N	V	F	A	V	P	T	V	L	L	S	N	T	P	H	Y	D	T	F	Y	G	G	A	I	P	D	E	W	F	S	G	Y	L	R	A	L	Q	E	R	D	A	L	R	Q	L	R	A	V	T	T	.
Query Conservation																											.																																																						.
Alig confidence										.	.																.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation										.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	H	V	L	L	G	K	.	.	H	S	G	A	G	L	L	S	A	L	S	A	L	S	F	G	S	G	V	V	S	V	Q	A	L	E	C	E	I	T	S	N	N	K	P	L	E	L	V	F	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	F	P	N	L	L	S	A	F	A	L	G
Template Known Secondary structure									S	.	.	S														T	T		S							S	S	S			S	S	S	S	S		T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			S	S		S
Template Predicted Secondary structure										.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																	.	.	.	.	290	.	.	.	.	.	.	.	.
			95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	G	Y	M	G	T	A	S	Q	I	K	I	L	A	E	W	L	T	A	L	R	K	D	H	P	D	L	L	I	M	V	D	P	V	I	G	D	I	D	S	G	I	Y	V	K	P	D	L	P	E	A	Y	R	Q	Y	L	L	P	L	A	Q	G	I	T	P	N	I	F	E	L	E	I	L	T	G	K	N	C	R	D
Query Conservation		.
Alig confidence		.																.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.												.	.	.	.	.	.
Template Sequence		X	G	L	E	N	I	P	K	D	F	N	R	W	L	E	L	.	.	.	.	.	.	.	.	.	.	A	P	C	V	L	D	.	.	.	.	.	.	A	G	V	F	Y	H	K	E	I	L	Q	.	.	.	.	.	.	A	L	E	K	E	A	V	L	T	P	H	P	K	E	F	L	S	L	L	N	L	V	G	I	N
Template Known Secondary structure		T	T		S	S			T	T								.	.	.	.	.	.	.	.	.	.	S						.	.	.	.	.	.	G	G	G	G	G	S	G	G	G	G	T	.	.	.	.	.	.	T	T	T	S	S																	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.												.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.											.	.	.	.	.	320							.	.	.	.	.	.	.	.	.	330	.							.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
						174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	L	D	S	A	I	A	A	A	K	S	L	L	S	D	T	L	K	W	V	V	V	T	S	A	S	G	N	E	E	N	Q	E	M	Q	V	V	V	V	T	A	D	S	V	N	V	I	S	H	S	R	V	K	T	D	L	K	G	T	G	D	L	F	C	A	Q	L	I	S	G	L	L	K	G	K	A	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																											.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.
Template Sequence		I	S	X	L	E	L	L	D	N	K	L	A	R	D	F	S	Q	K	Y	P	K	V	V	L	L	L	K	G	A	N	.	.	.	.	.	.	.	.	T	L	I	A	H	Q	G	Q	V	F	I	N	I	L	G	S	V	A	L	A	K	A	G	S	G	D	V	L	A	G	L	I	L	S	L	L	S	Q	N	Y	T	P
Template Known Secondary structure				T	T	S	G	G	G	S											T	T							S	S	S	.	.	.	.	.	.	.	.						T	T										G	G	G		S	T	T															T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.									.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	A	V	H	R	A	G	L	R	V	L	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	A	A	I	N	A	S	L	A	H	A	L	A
Template Known Secondary structure															G
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions