Job Description P40191 Confidence 99.76% Date Thu Jan 5 12:01:12 GMT 2012 Rank 28 Aligned Residues 245 % Identity 17% Template c3iq0B_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli Resolution 1.79 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.							50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.
Query Sequence		A	L	Q	A	D	I	V	A	V	Q	S	Q	V	V	Y	G	S	V	G	N	S	I	A	V	P	A	I	K	Q	N	G	L	N	V	F	A	V	.	.	.	.	.	.	P	T	V	L	L	S	N	T	P	H	Y	D	T	F	Y	G	G	A	I	P	D	E	W	F	S	G	Y	L	R	A	L	Q	E	R	D	A	L
Query Conservation																																							.	.	.	.	.	.
Alig confidence																		.	.	.	.																		.	.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		G	V	P	C	G	I	I	S	C	V	G	N	D	G	F	G	.	.	.	.	D	I	N	I	H	R	L	A	A	D	G	V	D	I	R	G	I	S	V	L	P	L	E	A	T	G	S	A	F	V	T	Y	G	D	R	D	F	I	F	N	I	K	N	A	A	C	G	K	L	S	A	Q	H	V	D	E	N	I	L	K
Template Known Secondary structure		T											S	S				.	.	.	.										T	T		B		T	T					T	T	S																			T	T	S	S	G	G	G			T	T	T	T		S	S	S	S	T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		87	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		R	Q	L	R	A	V	T	T	G	Y	.	M	G	T	A	S	Q	I	K	I	L	A	E	W	L	T	A	L	R	K	D	H	P	D	L	L	I	M	V	D	P	V	I	G	D	I	D	S	G	I	Y	V	K	P	D	L	P	E	A	Y	R	Q	Y	L	L	P	L	A	Q	G	I	T	P	N	I	F	E	L	E	I
Query Conservation												.
Alig confidence												.																					.	.									.	.	.	.
Template Conservation																																	.	.									.	.	.	.
Template Sequence		D	C	T	H	F	H	I	X	G	S	S	L	F	S	F	H	X	V	D	A	V	K	K	A	V	T	I	V	K	A	N	.	.	G	G	V	I	S	F	D	P	.	.	.	.	N	I	R	K	E	X	L	D	I	P	E	X	R	D	A	L	H	F	V	L	E	L	T	D	I	Y	X	P	S	E	G	E	V	L	L
Template Known Secondary structure		T								G	G	G		S	S																	T	.	.	T								.	.	.	.				G	G	G	G	G	S													T		S					B	G	G	G	T	T	T
Template Predicted Secondary structure																																	.	.									.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	G	K	N	C	R	D	L	D	S	A	I	A	A	A	K	S	L	L	S	D	T	L	K	W	V	V	V	T	S	A	S	G	N	E	E	N	Q	E	M	Q	V	V	V	V	T	A	D	S	V	N	V	I	S	H	S	R	V	K	T	D	L	K	G	T	G	D	L	F	C	A	Q	L	I	S	G	L	L	K
Query Conservation
Alig confidence							.	.	.	.	.																								.	.	.	.	.	.
Template Conservation							.	.	.	.	.																								.	.	.	.	.	.
Template Sequence		L	S	P	H	S	.	.	.	.	.	T	P	E	R	A	I	A	G	F	L	E	E	G	V	K	E	V	I	V	K	R	G	N	.	.	.	.	.	.	Q	G	A	S	Y	Y	S	A	N	E	Q	F	H	V	E	S	Y	P	V	E	E	V	D	P	T	G	A	G	D	C	F	G	G	A	W	I	A	C	R	Q	L
Template Known Secondary structure		T		S	S	S	.	.	.	.	.	S												T									G	G	.	.	.	.	.	.	G							S	S																T	T															T
Template Predicted Secondary structure							.	.	.	.	.																								.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.						.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	A	L	T	D	A	V	H	R	A	G	L	R	V	L	E	V	M	R	Y	T	Q	Q	H	E	S	D	E	L	I	L	P	P	L	A	E
Query Conservation
Alig confidence																														.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		G	F	D	A	H	R	A	L	Q	Y	A	N	A	C	G	A	L	A	V	T	R	R	G	P	X	E	G	T	.	.	.	.	S	R	L	X	E
Template Known Secondary structure		T																		T	T	S	S	S	T	T	T	T		.	.	.	.
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.					.	300	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions