Job Description P40191 Confidence 99.52% Date Thu Jan 5 12:01:12 GMT 2012 Rank 58 Aligned Residues 204 % Identity 16% Template c3bf5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution Resolution 1.91 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.							50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.
Query Sequence		A	L	Q	A	D	I	V	A	V	Q	S	Q	V	V	Y	G	S	V	G	N	S	I	A	V	P	A	I	K	Q	N	G	L	N	V	F	A	V	.	.	.	.	.	.	P	T	V	L	L	S	N	T	P	H	Y	D	T	F	Y	G	G	A	I	P	D	E	W	F	S	G	Y	L	R	A	L	Q	E	R	D	A	L
Query Conservation																																							.	.	.	.	.	.
Alig confidence																			.	.	.	.	.																.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation																			.	.	.	.	.																																												.	.	.	.	.	.
Template Sequence		R	I	P	F	D	L	Y	S	A	V	G	X	K	T	H	R	E	.	.	.	.	.	Y	L	A	X	I	E	S	X	G	I	N	T	G	H	V	E	K	F	E	D	E	S	G	P	I	C	Y	I	A	T	D	G	K	K	Q	V	S	F	X	H	Q	G	A	.	.	.	.	.	.	X	A	A	W	A	P	Q	L	A
Template Known Secondary structure		T											T	T	T				.	.	.	.	.								T	T				T	T					T	T				S								S	S									T		.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.																																												.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110							.	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	L	R	A	V	T	T	G	Y	M	G	T	A	S	Q	I	K	I	L	A	E	W	L	T	A	L	R	K	D	H	P	D	L	L	I	M	V	D	P	V	I	G	D	I	D	S	G	I	Y	V	K	P	D	L	P	E	A	Y	R	Q	Y	L	L	P	L	A	Q	G	I	T	P	N	I	F	E	L	E	I	L
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.									.	.													.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.									.	.													.	.	.	.	.	.	.	.
Template Sequence		D	E	Y	E	Y	V	H	F	S	T	G	P	N	.	.	.	.	.	.	.	.	.	Y	L	D	X	A	K	S	I	.	.	R	S	K	I	I	F	D	P	S	Q	E	I	.	.	.	.	.	.	.	.	H	K	Y	S	K	D	E	L	K	K	F	H	E	I	S	Y	X	S	I	F	N	D	H	E	Y	R	V	F
Template Known Secondary structure		S									S	S	S	S	.	.	.	.	.	.	.	.	.									.	.		S							G	G	G	G	.	.	.	.	.	.	.	.	G	G	S													S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.									.	.													.	.	.	.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.										.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.									.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	K	N	C	R	D	L	D	S	A	I	A	A	A	K	S	L	L	S	D	T	L	K	W	V	V	V	T	S	A	S	G	N	E	E	N	Q	E	M	Q	V	V	V	V	T	A	D	S	V	N	V	I	S	H	S	R	V	K	T	D	L	K	G	T	G	D	L	F	C	A	Q	L	I	S	G	L	L	K	G
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		R	E	X	T	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	P	K	V	T	T	I	V	T	N	G	.	.	.	.	.	.	.	E	R	G	S	S	L	F	X	D	G	K	K	Y	D	F	P	A	I	P	S	S	G	D	T	V	G	A	G	D	S	F	R	A	G	L	Y	L	A	L	Y	N	R
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S	S							G	.	.	.	.	.	.	.	G	G							T	T												S			T	T															T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.														.	.	.	190	.	.	.	.	.	.	.	.								.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	T	D	A	V	H	R	A	G	L	R	V	L	E	V	M	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	I	E	K	G	X	I	Y	G	T	I	I	A	H	H	V	I	D	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions