Job Description P40191 Confidence 99.72% Date Thu Jan 5 12:01:12 GMT 2012 Rank 34 Aligned Residues 230 % Identity 17% Template c3b1qD_ PDB info PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine Resolution 1.70 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.								50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.
Query Sequence		A	L	Q	A	D	I	V	A	V	Q	S	Q	V	V	Y	G	S	V	G	N	S	I	A	V	P	A	I	K	Q	N	G	L	N	V	F	A	V	.	.	.	.	.	.	.	P	T	V	L	L	S	N	T	P	H	Y	D	T	F	Y	G	G	A	I	P	D	E	W	F	S	G	Y	L	R	A	L	Q	E	R	D	A
Query Conservation																																							.	.	.	.	.	.	.
Alig confidence															.			.	.	.	.																		.	.	.	.	.	.	.																																		.	.	.
Template Conservation															.			.	.	.	.																																																										.	.	.
Template Sequence		G	G	D	A	R	M	M	G	T	L	G	A	V	.	D	A	.	.	.	.	Q	P	Y	L	D	R	M	D	A	L	G	L	S	R	E	Y	V	R	V	L	P	D	T	Y	S	A	Q	A	M	I	T	T	D	L	D	N	N	Q	I	T	A	F	H	P	G	A	M	M	Q	S	H	V	N	H	A	G	E	.	.	.
Template Known Secondary structure		T											T	T	.	T		.	.	.	.											T										T	T												T	T										G	G	G	G	G	G	G	G	S		G	G	G	.	.	.
Template Predicted Secondary structure															.			.	.	.	.																																																										.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.		.	.					.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	Q	L	R	A	V	T	T	G	Y	M	G	T	A	S	Q	I	K	I	L	A	E	W	L	T	A	L	R	K	D	H	P	D	L	L	I	M	V	D	P	V	I	G	D	I	D	S	G	I	Y	V	K	P	D	L	P	E	A	Y	R	Q	Y	L	L	P	L	A	Q	G	I	T	P	N	I	F	E	L	E	I
Query Conservation
Alig confidence											.	.	.	.																			.	.													.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.																			.	.													.	.	.	.	.	.	.	.
Template Sequence		A	K	D	I	K	L	A	I	V	.	.	.	.	G	P	D	G	F	Q	G	M	V	Q	H	T	E	E	L	A	Q	A	.	.	G	V	P	F	I	F	D	P	G	Q	G	L	.	.	.	.	.	.	.	.	P	L	F	D	G	A	T	L	R	R	S	I	E	L	A	T	Y	I	A	V	N	D	Y	E	A	K	L
Template Known Secondary structure				S		S					.	.	.	.		S																	.	.	T								G	G	G	G	.	.	.	.	.	.	.	.	G	G														S
Template Predicted Secondary structure											.	.	.	.																			.	.													.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.									.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		L	T	G	K	N	C	R	D	L	D	S	A	I	A	A	A	K	S	L	L	S	D	T	L	K	W	V	V	V	T	S	A	S	G	N	E	E	N	Q	E	M	Q	V	V	V	V	T	A	D	S	V	N	V	I	S	H	S	R	V	K	T	.	D	L	K	G	T	G	D	L	F	C	A	Q	L	I	S	G	L	L
Query Conservation																																																															.
Alig confidence												.	.	.	.	.	.	.	.																.	.	.	.	.	.																							.
Template Conservation												.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Sequence		V	C	D	K	T	G	W	S	E	D	.	.	.	.	.	.	.	.	E	I	A	S	R	V	Q	A	L	I	I	T	R	G	E	.	.	.	.	.	.	H	G	A	T	I	R	H	R	D	G	T	E	Q	I	P	A	V	R	A	E	R	V	I	D	P	T	G	C	G	D	A	F	R	G	G	L	L	Y	G	I	E
Template Known Secondary structure												.	.	.	.	.	.	.	.				T	T	S	S							G	G	.	.	.	.	.	.	G							T	T											S						T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.									.	210	.	.	.	.	.	.	.	.	.	220	.	.	.							.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	K	A	L	T	D	A	V	H	R	A	G	L	R	V	L	E	V	M	R	Y	T	Q	Q	H	E	S	D	E	L	I	L	P	P	L	A	E
Query Conservation
Alig confidence																															.	.	.	.
Template Conservation																															.	.	.	.
Template Sequence		H	G	F	D	W	A	T	A	G	R	L	A	S	L	M	G	A	L	K	I	A	H	Q	G	P	Q	T	Y	A	.	.	.	.	P	T	R	A	E
Template Known Secondary structure		T	T																			T	S	S	S	S	S				.	.	.	.
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.					.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions