Job Description P40191 Confidence 99.68% Date Thu Jan 5 12:01:12 GMT 2012 Rank 41 Aligned Residues 227 % Identity 16% Template c2nwhA_ PDB info PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens Resolution 1.86 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.									50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.								.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		A	L	Q	A	D	I	V	A	V	Q	S	Q	V	V	Y	G	S	V	G	N	S	I	A	V	P	A	I	K	Q	N	G	L	N	V	F	A	V	.	.	.	.	.	.	.	.	P	T	V	L	L	S	N	T	P	H	Y	D	T	F	Y	G	G	A	I	.	.	.	.	.	.	.	P	D	E	W	F	S	G	Y	L
Query Conservation																																							.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																		.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		G	F	E	V	R	I	I	A	P	R	G	G	D	V	T	G	.	.	.	.	E	V	V	A	E	A	A	R	Q	A	G	V	E	D	T	P	F	T	F	L	D	R	R	T	P	S	Y	T	A	I	L	E	R	D	G	N	L	V	I	A	L	A	D	M	D	L	Y	K	L	F	T	P	R	R	L	K	V	R	A	V
Template Known Secondary structure		T											S	S				.	.	.	.										T	T									T	T	S											T	T	S										G	G	G	G	G							T	S
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	L	Q	E	R	D	A	L	R	Q	L	R	A	V	T	T	G	Y	M	G	T	A	S	Q	I	K	I	L	A	E	W	L	T	A	L	R	K	D	H	P	D	L	L	I	M	V	D	P	V	I	G	D	I	D	S	G	I	Y	V	K	P	D	L	P	E	A	Y	R	Q	Y	L	L	P	L	A	Q	G	I	T
Query Conservation
Alig confidence							.	.	.	.	.																														.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.																														.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	A	I	I	.	.	.	.	.	A	S	D	F	L	L	C	D	A	N	L	P	E	D	T	L	T	A	L	G	L	I	A	R	A	C	E	K	P	.	.	L	A	A	I	A	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	K	A	V	K	L	K	A	A	L	G	D	I	D	I	L	F
Template Known Secondary structure							.	.	.	.	.			S						T	T	S															T	T			.	.							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G	T	T	T	G	G	G		S
Template Predicted Secondary structure							.	.	.	.	.																														.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.															.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		P	N	I	F	E	L	E	I	L	T	G	K	N	C	R	D	L	D	S	A	I	A	A	A	K	S	L	L	S	D	T	L	K	W	V	V	V	T	S	A	S	G	N	E	E	N	Q	E	M	Q	V	V	V	V	T	A	D	S	V	N	V	I	S	H	S	R	V	K	T	.	D	L	K	G	T	G	D	L	F	C
Query Conservation																																																																							.
Alig confidence															.	.	.	.	.	.	.	.																					.	.	.	.	.	.																							.
Template Conservation															.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Sequence		M	N	E	A	E	A	R	A	L	T	G	V	R	.	.	.	.	.	.	.	.	D	W	P	N	I	L	R	K	A	G	L	S	G	G	V	V	T	R	G	A	.	.	.	.	.	.	S	E	V	V	A	F	N	G	T	E	K	A	I	L	H	P	P	L	I	R	E	V	K	D	V	T	G	A	G	D	A	M	A
Template Known Secondary structure														T	.	.	.	.	.	.	.	.	T								T	T									T	T	.	.	.	.	.	.	T							S	S										S	S	S		S					S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.									.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	L	I	S	G	L	L	K	G	K	A	L	T	D	A	V	H	R	A	G	L	R	V	L	E	V	M	R	Y	T	Q	Q	H	E	S	D	E	L	I	L	P	P	L	A	E
Query Conservation
Alig confidence																																							.	.	.	.
Template Conservation																																							.	.	.	.
Template Sequence		S	G	Y	L	A	A	I	A	E	G	K	T	I	R	E	A	L	R	Q	G	A	A	A	A	A	I	T	V	Q	S	S	F	A	T	S	Q	D	.	.	.	.	L	S	K	D	S
Template Known Secondary structure										T	T																			S	S	T	T			G	G	G	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.					.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions