 |
Job Description | P11557 | Confidence | 4.99% | Date | Thu Jan 5 11:32:47 GMT 2012 |
Rank | 45 | Aligned Residues | 58 |
% Identity | 14% | Template | d1fnxh2 |
SCOP info | Ferredoxin-like
| RNA-binding domain, RBD
| Canonical RBD
|
Resolution | UNK |
|
 |
  |   |
348 | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | |
370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | T | L | Q | L | S | S | S | S | N | Y | D | N | L | N | G | W | A | K | K | E | N | . |
L | K | N | Y | V | V | Y | E | T | T | R | N | G | Q | P | W | Y | V | L | V | S | G | V | Y | A | S | K | E | E | A | K | K | A | V | S | T | L |
Query Conservation |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|   |   |   |
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
| . |   |
|   |   |   |   |   |
|   |   |
|
|   |   |
|
Template Sequence |   |
Y | V | S | G | L | P | K | T | M | S | Q | K | E | M | E | Q | L | F | S | Q | Y | G | R | I | I | T | S | R | I | L | L | D | Q | A | T | G | V | S | R | G | V | G | F | I | . |
R | F | D | K | R | I | E | A | E | E | A | I | K | G | L |
Template Known Secondary structure |   |
 |  |  |
|
|
| T | T |
|
|  |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |
|
| S | S | S | S |
|
|
|
|  |  |  |  | . |  |  | S |
|  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  | . |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
128 | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | |
. | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|