Job Description P11557 Confidence 7.98% Date Thu Jan 5 11:32:47 GMT 2012 Rank 24 Aligned Residues 72 % Identity 15% Template c2dnmA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:srp46 splicing factor; PDBTitle: solution structure of rna binding domain in srp46 splicing2 factor Resolution UNK

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		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.				.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		G	N	V	G	S	L	K	S	A	P	S	S	H	Y	T	L	Q	L	S	S	S	S	.	.	.	N	Y	D	N	L	N	G	W	A	K	K	E	N	L	K	N	Y	V	V	Y	E	T	T	R	N	G	Q	P	W	Y	V	L	V	S	G	V	Y	A	S	K	E	E	A	K	K	A	V	S	T	L
Query Conservation																								.	.	.
Alig confidence																								.	.	.
Template Conservation
Template Sequence		G	S	S	G	S	S	G	P	D	V	D	G	M	I	T	L	K	V	D	N	L	T	Y	R	T	S	P	D	S	L	R	R	V	F	E	K	Y	G	R	V	G	D	V	Y	I	P	R	E	P	H	T	K	A	P	R	G	F	A	F	V	R	F	H	D	R	R	D	A	Q	D	A	E	A	A	M
Template Known Secondary structure								S	S			S									S			T	T											T	T	T	S									B		S	S	S		S	B		S							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions