Job Description P76123 Confidence 99.80% Date Thu Jan 5 12:19:16 GMT 2012 Rank 35 Aligned Residues 312 % Identity 10% Template d2bnha_ SCOP info Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) RNI-like 28-residue LRR Resolution 2.30

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.						.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.						.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																				.	.	.	.	.					.	.																					.								.	.	.	.	.
Query SS confidence																				.	.	.	.	.					.	.																					.								.	.	.	.	.
Query Sequence		I	L	H	N	H	P	R	M	K	T	I	T	L	N	D	N	H	I	.	.	.	.	.	A	H	L	N	.	.	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	.	N	D	I	D	Q	L	I	.	.	.	.	.	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L
Query Conservation																				.	.	.	.	.					.	.																					.								.	.	.	.	.
Alig confidence																				.	.	.	.	.					.	.																					.								.	.	.	.	.
Template Conservation
Template Sequence		L	L	P	L	L	Q	Q	Y	E	V	V	R	L	D	D	C	G	L	T	E	E	H	C	K	D	I	G	S	A	L	R	A	N	P	S	L	T	E	L	C	L	R	T	N	E	L	G	D	A	G	V	H	L	V	L	Q	G	L	Q	S	P	T	C	K	I	Q	K	L	S	L	Q	N	C	S	L	T	E	A	G	C
Template Known Secondary structure							T	T		S						T																T	T		T	T								S																S	S	T	T									T	T	S				G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	M	Q	Y	W	T	A	V	R	N	I	I	D	D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	L	P	S	T	L	R	S	L	P	T	L	R	E	L	H	L	S	D	N	P	L	G	D	A	G	L	R	L	L	C	E	G	L	L	D	P	Q	C	H	L	E	K	L	Q	L	E	Y	C	R	L	T	A	A	S	C	E	P	L	A	S	V	L	R	A	T	R	A	L	K	E	L	T	V	S	N	N	D	I
Template Known Secondary structure		G	S									T	T								S																	S	T	T									T	T				B															S								T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
																																																																													124	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	T	N	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	A	G	A	R	V	L	G	Q	G	L	A	D	S	A	C	Q	L	E	T	L	R	L	E	N	C	G	L	T	P	A	N	C	K	D	L	C	G	I	V	A	S	Q	A	S	L	R	E	L	D	L	G	S	N	G	L	G	D	A	G	I	A	E	L	C	P	G	L	L	S	P	A	S	R	L	K	T	L	W
Template Known Secondary structure															T			S								T	T	S																		T	T								S	S															T		T	T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N	N	N	A	L	R	N	I	D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	W	E	C	D	I	T	A	S	G	C	R	D	L	C	R	V	L	Q	A	K	E	T	L	K	E	L	S	L	A	G	N	K	L	G	D	E	G	A	R	L	L	C	E	S	L	L	Q	P	G	C	Q	L	E	S	L	W	V	K	S	C	S	L	T	A	A	C	C	Q	H	V	S	L	M	L	T	Q	N	K	H
Template Known Secondary structure			T	T	S																		S	S							T	T	S															T	S	T	T									T	T	S			B	G	G	G												S	S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250						.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																												.	.	.	.	.																																	.
Query SS confidence																																												.	.	.	.	.																																	.
Query Sequence		I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N	L	N	T	L	L	I	N	N	N	L	L	S	E	.	.	.	.	.	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	.
Query Conservation																																												.	.	.	.	.																																	.
Alig confidence																																												.	.	.	.	.																																	.
Template Conservation
Template Sequence		L	L	E	L	Q	L	S	S	N	K	L	G	D	S	G	I	Q	E	L	C	Q	A	L	S	Q	P	G	T	T	L	R	V	L	C	L	G	D	C	E	V	T	N	S	G	C	S	S	L	A	S	L	L	L	A	N	R	S	L	R	E	L	D	L	S	N	N	C	V	G	D	P	G	V	L	Q	L	L	G	S	L
Template Known Secondary structure									S	S	B													T	T	S	S	S									T	T	S																			S							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
						283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	P	S	I	K	S	L	R	L	D	N	N	K	I	T	H	I	D	T	N	N	T	S	D	I	G	T	L	F	P	I	I	K	Q	S	K
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		E	Q	P	G	C	A	L	E	Q	L	V	L	Y	D	T	Y	W	T	E	E	V	E	D	R	L	Q	A	L	E	G	S	K	P	G	L	R	V	I	S
Template Known Secondary structure		T	S	S	S									T	T																			S	S
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions