Job Description P76123 Confidence 99.88% Date Thu Jan 5 12:19:16 GMT 2012 Rank 25 Aligned Residues 258 % Identity 13% Template d1ogqa_ SCOP info Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Polygalacturonase inhibiting protein PGIP Resolution 1.7

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																				.	.	.			.	.																				.	.
Query SS confidence																				.	.	.			.	.																				.	.
Query Sequence		H	N	H	P	R	M	K	T	I	T	L	N	D	N	H	I	A	H	.	.	.	L	N	.	.	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	.	.	T	N	D	I	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T	A
Query Conservation																				.	.	.			.	.																				.	.
Alig confidence																				.	.	.			.	.																				.	.
Template Conservation
Template Sequence		T	Q	T	Y	R	V	N	N	L	D	L	S	G	L	N	L	P	K	P	Y	P	I	P	S	S	L	A	N	L	P	Y	L	N	F	L	Y	I	G	G	I	N	N	L	V	G	P	I	P	P	A	I	A	K	L	T	Q	L	H	Y	L	Y	I	T	H	T	N	V	S	G	A	I	P	D	F	L	S	Q	I	K	T
Template Known Secondary structure		S	S															S	S						G	G	G	G	G		T	T		S								T	T			S				G	G	G	G	G		T	T		S															G	G	G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	N	I	I	D	D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	T	L	D	F	S	Y	N	A	L	S	G	T	L	P	P	S	I	S	S	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	V	G	I	T	F	D	G	N	R	I	S	G	A	I	P	D	S
Template Known Secondary structure									S	S				S				G	G	G	G	G		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S	S								G	G
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.																																							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	A	L	R	N	I	D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N	L	N	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	S	F	S	K	L	F	T	S	M	T	I	S	R	N	R	L	T	G	K	I	P	P	T	F	A	N	L	N	L	A	F	V	D	L	S	R	N	M	L	E	G	D	A	S	V	L	F	G	S	D	K	N	T	Q	K	I	H	L	A	K	N	S	L	A	F	D	L	G	K	V	G	L	S	K	N	L	N	G
Template Known Secondary structure		G	G				T	T								S	S								G	G	G	G	G				S						S	S							G	G	G			T	T	S			S						S	S					B	G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure											.																																														.
Query SS confidence											.																																														.
Query Sequence		L	L	I	N	N	N	L	L	S	.	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	P	S	I	K	S	L	R	L	D	N	N	K	.	I	T	H	I	D	T	N	N	T	S
Query Conservation											.																																														.
Alig confidence											.																													.																	.
Template Conservation																																								.
Template Sequence		L	D	L	R	N	N	R	I	Y	G	T	L	P	Q	G	L	T	Q	L	K	F	L	H	S	L	N	V	S	F	N	N	L	C	G	E	I	P	Q	.	G	G	N	L	Q	R	F	D	V	S	A	Y	A	N	N	K	C	L	C	G	S	P	L	P	A	C	T
Template Known Secondary structure						S	S								G	G	G	G	G		T	T								S	S									.	S	T	T	G	G	G	S		G	G	G	T		S	S	S				S	T	T	S	S
Template Predicted Secondary structure																																								.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions