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Job DescriptionP76123
Confidence99.94%DateThu Jan 5 12:19:16 GMT 2012
Rank13Aligned Residues305
% Identity11%Templatec3rg1I_
PDB info PDB header:immune systemChain: I: PDB Molecule:cd180 molecule; PDBTitle: crystal structure of the rp105/md-1 complex
Resolution2.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20....... ..30.........40....... ..50.........60.........70.......
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Query Sequence  ITDLILHNHPRMKTITLNDNHIAHLN. . . AKNTTKLEYLNLSNNNLLPT. NDIDQLISSKHLWHVLVNGINNDPLAQMQY
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Template Sequence  IPDTLP. . . NTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTG
Template Known Secondary structure 

TTS
...TT



S


S
TTTTSS
TT
S
TTS



TTTTTT
TT


TT




TTTT

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   47..50.. .......60.........70.........80.........90.........100.........110.........120...
 
   78.80.........90.........100.........110.........120.........130.........140.
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Query Sequence  WTAVRNIIDDTNEVTIDLSGLNLTTQPPGLQNFTSINLDNNQFTHFDATNYDRLVKLSLNSNAL. . . . . . . . . . . . . . . .
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Template Sequence  PKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLS
Template Known Secondary structure 
S



TTS



GGGS

TT
TT
S
TTS







TT


TT



SS



TTTT
SS
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   124.....130.........140.........150.........160.........170.........180.........190.........200...
 
   142.......150.........160.........170.........180.........190.........200.........210.........220.
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Query Sequence  ESINFPQGRNVSITHISMNNNALRNIDIDRLSSVTYFSAAHNQLEFVQLESCEWLQYLNLSHNQLTDIVAGNKNELLLLD
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Template Sequence  LNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQK
Template Known Secondary structure 
TT




TTTT
STT
TT
S
TTT




TTS



B
GGGGGGGGGS
TT
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   204.....210.........220.........230.........240.........250.........260.........270.........280...
 
   222.......230.........240.........250.........260.........270.........280.........290...... ...300
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Query Sequence  LSHNKLTSLHNDLFPNLNTLLINNNLLSEIKIFYSNFCNVQTLNAANNQLKYINLDFLTYLPSIKSLRLDNNKIT. HIDT
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Template Sequence  HRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGT
Template Known Secondary structure 

BSS

GGGGTT
TT


TT


S


S

STTTT


TT


SBGGGG
GGG
TT



S
SS

B

S
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   284.....290.........300.........310.........320.........330.........340.........350.........360...
 
   301........
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Query Sequence  NNTSDIGTL
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Template Conservation       
  
Template Sequence  RCLEKLENL
Template Known Secondary structure  STTTT
TT
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   364.....370..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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