Job Description P76123 Confidence 99.95% Date Thu Jan 5 12:19:16 GMT 2012 Rank 10 Aligned Residues 301 % Identity 15% Template c3o6nA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:apl1; PDBTitle: crystal structure of apl1 leucine-rich repeat domain Resolution 1.85 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																							.	.	.																					.
Query SS confidence																							.	.	.																					.
Query Sequence		L	H	N	H	P	R	M	K	T	I	T	L	N	D	N	H	I	A	H	L	N	.	.	.	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	.	N	D	I	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T	A	V	R
Query Conservation																							.	.	.																					.
Alig confidence																							.	.	.																					.
Template Conservation
Template Sequence		D	I	T	L	N	N	Q	K	I	V	T	F	K	N	S	T	M	R	K	L	P	A	A	L	L	D	S	F	R	Q	V	E	L	L	N	L	N	D	L	Q	I	E	E	I	D	T	Y	A	F	A	Y	A	H	T	I	Q	K	L	Y	M	G	F	N	A	I	R	Y	L	P	P	H	V	F	Q	N	V	P	L	L	T
Template Known Secondary structure		S	G	G	G				S						S				S				T										S					T	T	S							T	T	T	T	T	T		T	T								S	S							T	T	T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	I	D	D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N	N	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	V	L	E	R	N	D	L	S	S	L	P	R	G	I	F	H	N	T	P	K	L	T	T	L	S	M	S	N	N	N	L	E	R	I	E	D	D	T	F	Q	A	T	T	S	L	Q	N	L	Q	L	S	S	N	R	L	T	H	V	D	L	S	L	I	P	S	L	F	H	A	N	V	S	Y	N	L	L	S	T
Template Known Secondary structure							S	S							T	T	T	T	T	T		T	T								S	S				B			T	T	T	T	S	S		T	T								S	S			S	B			G	G	G		T	T		S						S	S			S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	R	N	I	D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N	L	N	T	L	L
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		L	A	I	P	I	A	V	E	E	L	D	A	.	.	S	H	N	S	I	N	V	V	R	G	P	V	N	V	E	L	T	I	L	K	L	Q	H	N	N	L	T	D	T	A	W	L	L	N	Y	P	G	L	V	E	V	D	L	S	Y	N	E	L	E	K	I	M	Y	H	P	F	V	K	M	Q	R	L	E	R	L	Y
Template Known Secondary structure						S	S		S					.	.		S	S											S	S								S	S						G	G	G	G	G		T	T		S						S	S							S	G	G	G	T	T		S	S
Template Predicted Secondary structure														.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	N	N	L	L	S	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	P	S	I	K	S	L	R	L	D	N	N	K	I	T	H	I	D	T	N	N	T	S	D	I	G	T	L	F
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		I	S	N	N	R	L	V	A	L	N	L	Y	G	Q	P	I	P	T	L	K	V	L	D	L	S	H	N	H	L	L	H	V	E	R	N	.	Q	P	Q	F	D	R	L	E	N	L	Y	L	D	H	N	S	I	V	T	L	K	L	S	T	H	H	T	L	K	N	L	T
Template Known Secondary structure				S	S								S	S	S			T	T								S	S						G	G	G	.					T	T		S						S	S									T	T				S
Template Predicted Secondary structure																																					.
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions