Job Description P76123 Confidence 99.78% Date Thu Jan 5 12:19:16 GMT 2012 Rank 40 Aligned Residues 255 % Identity 16% Template c3g06A_ PDB info PDB header:ligase Chain: A: PDB Molecule:ssph2 (leucine-rich repeat protein); PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	D	L	I	L	H	N	H	P	R	M	K	T	I	T	L	N	D	N	H	I	A	H	L	N	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	N	D	I	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T	A	V
Query Conservation
Alig confidence								.	.	.																		.																					.	.	.																							.	.	.	.	.	.	.	.
Template Conservation								.	.	.																		.																					.	.	.																							.	.	.	.	.	.	.	.
Template Sequence		L	P	D	C	L	P	.	.	.	A	H	I	T	T	L	V	I	P	D	N	N	L	T	S	L	P	.	A	L	P	P	E	L	R	T	L	E	V	S	G	N	Q	L	T	S	L	P	.	.	.	V	L	P	P	G	L	L	E	L	S	I	F	S	N	P	L	T	H	L	P	A	L	.	.	.	.	.	.	.	.
Template Known Secondary structure				S				.	.	.	T	T		S						S				S				.				T	T								S				S				.	.	.				T	T								S										.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.																		.																					.	.	.																							.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	I	I	D	D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N	N
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	P	S	G	L	C	K	L	W	I	F	G	N	Q	L	T	S	L	P	V	L	P	P	G	L	Q	E	L	S	V	S	D	N	Q	L	A	S	L	P	A	L	P	S	E	L	C	K	L	W	A	Y	N	N	Q	L	T	S	L	P	M	L	P	S	G	L	Q	E	L	S	V	S	D	N	Q	L	A
Template Known Secondary structure		.	.	.	.	.		T	T								S	S			S							T	T								S	S			S							T	T								S	S			S							T	T								S	S			S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	L	R	N	I	D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N	L	N	T	L
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	P	T	L	P	S	E	L	Y	K	L	W	A	Y	N	N	R	L	T	S	L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	S	G	L	K	E	L	I	V	S	G	N	R	L	T	S	L	P	V	L	P	S	E	L	K	E	L
Template Known Secondary structure								T	T								S	S			S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T								S	S			S							T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.																													380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	N	N	N	L	L	S	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	P	S	I	K	S	L	R	L	D	N	N	K	I	T	H	I	D	T	N	N	T	S	D	I	G	T
Query Conservation
Alig confidence																.	.	.																				.
Template Conservation																.	.	.																				.
Template Sequence		M	V	S	G	N	R	L	T	S	L	P	M	L	P	.	.	.	S	G	L	L	S	L	S	V	Y	R	N	Q	L	T	R	L	P	E	S	.	L	I	H	L	S	S	E	T	T	V	N	L	E	G	N	P	L	S	E	R	T	L	Q	A	L	R	E	I	T	S
Template Known Secondary structure					S	S			S							.	.	.	T	T								S	S				S			G	G	.	G	G	G	S		T	T							S
Template Predicted Secondary structure																.	.	.																				.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.				.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440		.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions