Job Description P76123 Confidence 99.92% Date Thu Jan 5 12:19:16 GMT 2012 Rank 23 Aligned Residues 297 % Identity 13% Template c3bz5A_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:internalin-j; PDBTitle: functional domain of inlj from listeria monocytogenes2 includes a cysteine ladder Resolution 2.70 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	N	H	P	R	M	K	T	I	T	L	N	D	N	H	I	A	H	L	N	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	N	D	I	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T	A	V	R	N	I	I	D
Query Conservation
Alig confidence																																												.	.
Template Conservation																																												.	.
Template Sequence		I	E	K	L	T	G	L	T	K	L	I	C	T	S	N	N	I	T	T	L	D	L	S	Q	N	T	N	L	T	Y	L	A	C	D	S	N	K	L	T	N	L	D	.	.	V	T	P	L	T	K	L	T	Y	L	N	C	D	T	N	K	L	T	K	L	D	V	S	Q	N	P	L	L	T	Y	L	N	C	A	R	N
Template Known Secondary structure		G	G	G		T	T		S						S	S			S					T	T		T	T		S						S	S			S				.	.		T	T		T	T								S	S			S					T	T		T	T							T	T	S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N	N	N	A	L	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	T	E	I	D	V	S	H	N	T	Q	L	T	E	L	D	C	H	L	N	K	K	I	T	K	L	D	V	T	P	Q	T	Q	L	T	T	L	D	C	S	F	N	K	I	T	E	L	D	V	S	Q	N	K	L	L	N	R	L	N	C	D	T	N	N	I	T	K	L	D	L	N	Q	N	I	Q	L	T	F	L
Template Known Secondary structure				S					T	T		T	T							T	T		S								T	T		T	T								S	S								T	T		T	T								S	S			S					T	T		T	T		S
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.											.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L	.	.	.	.	.	.	.	.	.	.	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P
Query Conservation																					.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	C	S	S	N	K	L	T	E	I	D	V	T	P	L	T	Q	L	T	Y	F	D	C	S	V	N	P	L	T	E	L	D	V	S	T	L	S	K	L	T	T	L	H	C	I	Q	T	D	L	L	E	I	D	L	T	H	N	T	Q	L	I	Y	F	Q	A	E	G	C	R	K	I	K	E	L	D	V	T	H	N	T
Template Known Secondary structure					S	S			S					T	T		T	T		S						S	S			S					T	T		T	T							T	T				S					T	T		T	T							T	T		T	T							T	T		T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		N	L	N	T	L	L	I	N	N	N	L	L	S	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	P	S	I	K	S	L	R	L	D	N	N	K	I	T	H	I	.	D	T	N	N	T	S	D	I	G	T	L	F
Query Conservation																																																																.
Alig confidence																		.	.																						.	.	.																					.
Template Conservation																		.	.																						.	.	.
Template Sequence		Q	L	Y	L	L	D	C	Q	A	A	G	I	T	E	L	D	.	.	L	S	Q	N	P	K	L	V	Y	L	Y	L	N	N	T	E	L	T	E	L	D	.	.	.	V	S	H	N	T	K	L	K	S	L	S	C	V	N	A	H	I	Q	D	F	S	S	V	G	K	I	P	A	L	N	N	N	F
Template Known Secondary structure		T							T	T				S				.	.		T	T		T	T							T	T				S				.	.	.		T	T		T	T		S						S	S				B		T	T	G	G	G	S	S	G	G	G	T	S
Template Predicted Secondary structure																		.	.																						.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.				.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions