Job Description P76123 Confidence 99.94% Date Thu Jan 5 12:19:16 GMT 2012 Rank 17 Aligned Residues 307 % Identity 15% Template c3a79B_ PDB info PDB header:immune system Chain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		I	T	D	L	I	L	H	N	H	P	R	M	K	T	I	T	L	N	D	N	H	I	A	H	L	N	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	N	.	.	D	I	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T
Query Conservation																																																	.	.
Alig confidence																																																	.	.
Template Conservation
Template Sequence		L	D	F	H	V	F	L	F	N	Q	D	L	E	Y	L	D	V	S	H	N	R	L	Q	N	I	S	C	C	P	M	A	S	L	R	H	L	D	L	S	F	N	D	F	D	V	L	P	V	C	K	E	F	G	N	L	T	K	L	T	F	L	G	L	S	A	A	K	F	R	Q	L	D	L	L	P	V	A	H	L	H
Template Known Secondary structure				T	T	T	T	T	T		T	T							T	T	S							S				T	T		S						S	S			S	B					G	G	G	G	G		T	T									S	B			T	T	T	T	G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	R	N	I	I	D	D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	C	I	L	L	D	L	V	S	Y	H	I	K	G	G	E	T	E	S	L	Q	I	P	N	T	T	V	L	H	L	V	F	H	P	N	S	L	F	S	V	Q	V	N	M	S	V	N	A	L	G	H	L	Q	L	S	N	I	K	L	N	D	E	N	C	Q	R	L	M	T	F	L	S	E	L	T	R	G	P	T
Template Known Secondary structure										S	S					S	S	S																		S	S	S											S	S													S	T	T													S		S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	N	V	T	L	Q	H	I	E	T	T	W	K	C	S	V	K	L	F	Q	F	F	W	P	R	P	V	E	Y	L	N	I	Y	N	L	T	I	T	E	R	I	D	R	E	E	F	T	Y	S	E	T	A	L	K	S	L	M	I	E	H	V	K	N	Q	V	F	L	F	S	K	E	A	L	Y	S	V	F	A	E
Template Known Secondary structure																									T	T	S	S													S											S		S															S	S											T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
									124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N	N	N	A	L	R	N	I	D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	N	I	K	M	L	S	I	S	D	T	P	F	I	H	M	V	C	P	P	S	P	S	S	F	T	F	L	N	F	T	Q	N	V	F	T	D	S	V	F	Q	G	C	S	T	L	K	R	L	Q	T	L	I	L	Q	R	N	G	L	K	N	F	F	K	V	A	L	M	T	K	N	M	S	S	L	E	T	L	D	V
Template Known Secondary structure					S						S	S									S	S											S	S				T	T	T	T	T	T			S		S	S								S	S				B	T	T					T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N	L	N	T	L	L	I	N	N	N	L	L	S	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	N	S	L	N	S	H	A	Y	D	R	T	C	A	W	A	E	S	I	L	V	L	N	L	S	S	N	M	L	T	G	S	V	F	R	C	L	P	P	K	V	K	V	L	D	L	H	N	N	R	I	M	S	I	P	K	D	V	T	H	L	Q	A	L	Q	E	L	N	V	A	S	N	Q	L	K	S	V	P	D
Template Known Secondary structure		T	T	S			B	S			S	S							T	T								S	S				G	G	G	G	S	S			T	T		S						S	S							T	T	T	T	S	S				S						S	S							T
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	L	T	Y	L	P	S	I	K	S	L	R	L	D	N	N	K	I	T	H	I	D	T	N	N	T	S	D	I	G	T	L
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		G	V	F	D	R	L	T	S	L	Q	Y	I	W	L	H	D	N	P	W	D	C	T	C	.	P	G	I	R	Y	L	S	E	W
Template Known Secondary structure		T	S	T	T	T		T	T								S			B					.
Template Predicted Secondary structure																									.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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