Job Description P76123 Confidence 99.94% Date Thu Jan 5 12:19:16 GMT 2012 Rank 20 Aligned Residues 279 % Identity 15% Template c2z80A_ PDB info PDB header:immune system Chain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide Resolution 1.80 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		N	H	P	R	M	K	T	I	T	L	N	D	N	H	I	A	H	L	N	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	N	D	I	.	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T	A	V	R	N	I	I	D	D
Query Conservation																																												.
Alig confidence																																												.																														.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		S	C	D	R	N	G	I	C	K	G	S	S	G	S	L	N	S	I	P	S	G	L	T	E	A	V	K	S	L	D	L	S	N	N	R	I	T	Y	I	S	N	S	D	L	Q	R	C	V	N	L	Q	A	L	V	L	T	S	N	G	I	N	T	I	E	E	D	S	F	S	S	L	G	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	S						S	T	T		S	S			T	T			T	T							T	T	S							T	T	T	T	T	T		T	T							T	T	S							T	T	T	T	T	T		T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N	N	N	A	L	R	N	I
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	S	L	E	H	L	D	L	S	Y	N	Y	L	S	N	L	S	S	S	W	F	K	P	L	S	S	L	T	F	L	N	L	L	G	N	P	Y	K	T	L	G	E	T	S	L	F	S	H	L	T	K	L	Q	I	L	R	V	G	N	M	D	T	F	T	K	I	Q	R	K	D	F	A	G	L	T	F	L	E	E	L
Template Known Secondary structure		.	T								S	S			S	S							T	T		T	T		S					T	T				S	S	S		S	S		S		T	T		T	T									S	S	S						T	T	T	T	T	T
Template Predicted Secondary structure		.
Template SS confidence
			101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N	L	N	T	L	L	I	N	N	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	D	A	S	D	L	Q	S	Y	E	P	K	S	L	K	S	I	Q	N	V	S	H	L	I	L	H	M	K	Q	H	I	L	L	L	E	I	F	V	D	V	T	S	S	V	E	C	L	E	L	R	D	T	D	L	D	T	F	H	F	S	T	N	S	L	I	K	K	F	T	F	R	N	V	K	I	T	D	E	S
Template Known Secondary structure						T	T						T	T	T	T	T	T		S										S		S	T	T									T	T	T								S		B		T	T																S		B
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	P	S	I	K	S	L	R	L	D	N	N	K	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	Q	V	M	K	L	L	N	Q	I	S	G	L	L	E	L	E	F	S	R	N	Q	L	K	S	V	P	D	G	I	F	D	R	L	T	S	L	Q	K	I	W	L	H	T	N	P	W	D
Template Known Secondary structure											T		T	T								S	S							T	T	T	T	T	T		T	T								S	S		B
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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