Job Description P76123 Confidence 99.72% Date Thu Jan 5 12:19:16 GMT 2012 Rank 48 Aligned Residues 248 % Identity 14% Template c2z66A_ PDB info PDB header:immune system Chain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 4; PDBTitle: crystal structure of the vt3 hybrid of human tlr4 and hagfish vlrb.61 Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		K	T	I	T	L	N	D	N	H	I	A	H	L	N	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	.	N	D	I	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T	A	V	R	N	I	I	D	D	T	N	E	V	T
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		T	E	I	R	C	N	S	K	G	L	T	S	V	P	T	G	I	P	S	S	A	T	R	L	E	L	E	S	N	K	L	Q	S	L	P	H	G	V	F	D	K	L	T	Q	L	T	K	L	S	L	S	S	N	G	L	S	F	K	G	C	C	S	Q	S	D	F	G	T	T	S	L	K	Y	L	D	L	S	F	N	G
Template Known Secondary structure		T						S	S			S	S			S				T	T								S	S							T	T	T	T	T	T		T	T		S						S	S														S		S									S		S
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N	N	N	A	L	R	N	I	D	I	D	R	L
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	T	M	S	S	N	F	L	G	L	E	Q	L	E	H	L	D	F	Q	H	S	N	L	K	Q	M	S	E	F	S	V	F	L	S	L	R	N	L	I	Y	L	D	I	S	H	T	H	T	R	V	A	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T		T	T							T	T	S				S	S	T	T	T	T	T	T	T	T		T	T							T	T	S						S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	V	T	Y	F	S	A	A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N	L	N	T	L	L	I	N	N	N	L	L	S	E	I	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	G	I	F	N	G	L	S	S	L	E	V	L	K	M	A	G	N	S	F	Q	E	N	F	L	P	D	I	F	T	E	L	R	N	L	T	F	L	D	L	S	Q	C	Q	L	E	Q	L	S	P	T	A	F	N	S	L	S	S	L	Q	V	L	N	M	S	H	N	N	F	F	S	L	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	T	T	T	T		T	T							T	T				G	G	G				S			T	T		T	T							T	T	S							T	T	T	T	T	T		T	T							T	T	S			S	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
		253	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure				.																													.
Query SS confidence				.																													.
Query Sequence		I	F	.	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	.	P	S	I	K	S	L	R	L	D	N	N	K	I
Query Conservation				.																													.
Alig confidence				.																													.
Template Conservation
Template Sequence		T	F	P	Y	K	C	L	N	S	L	Q	V	L	D	Y	S	L	N	H	I	M	T	S	K	K	Q	E	L	Q	H	F	P	S	S	L	A	F	L	N	L	T	Q	N	D	F
Template Known Secondary structure		S	G	G	G	T	T		T	T							T	T	S				B		S	S	S	S						T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions