Job Description P76123 Confidence 99.95% Date Thu Jan 5 12:19:16 GMT 2012 Rank 8 Aligned Residues 297 % Identity 15% Template c2omwA_ PDB info PDB header:cell invasion/cell adhesion Chain: A: PDB Molecule:internalin-a; PDBTitle: crystal structure of inla s192n y369s/mec1 complex Resolution 1.85 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		L	H	N	H	P	R	M	K	T	I	T	L	N	D	N	H	I	A	H	L	N	.	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	N	D	I	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T	A	V	R	N	I	I
Query Conservation																							.
Alig confidence																							.																							.
Template Conservation																																														.
Template Sequence		Q	T	D	L	D	Q	V	T	T	L	Q	A	D	R	L	G	I	K	S	I	D	G	V	E	Y	L	N	N	L	T	Q	I	N	F	S	N	N	Q	L	T	D	I	T	P	.	L	K	N	L	T	K	L	V	D	I	L	M	N	N	N	Q	I	A	D	I	T	P	L	A	N	L	T	N	L	T	G	L	T	L	F
Template Known Secondary structure						T	T							T	T	S						T	T	G	G	G		T	T								S	S						G	G	.	G	T	T		T	T								S	S						G	G	G	T	T		T	T		S
Template Predicted Secondary structure																																														.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	N	Q	I	T	D	I	D	P	L	K	N	L	T	N	L	N	R	L	E	L	S	S	N	T	I	S	D	I	S	A	L	S	G	L	T	S	L	Q	Q	L	N	F	G	N	Q	V	T	D	L	K	P	L	A	N	L	T	T	L	E	R	L	D	I	S	S	N	K	V	S	D	I	S	V	L	A	K	L	T	N
Template Known Secondary structure		S	S						G	G	G	T	T		T	T		S													G	G	G	T	T		T	T		S							S					G	G	G	T	T		T	T							T	T	S						G	G	G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
																				124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N	N	N	A	L	R	N	I	D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	S	L	I	A	T	N	N	Q	I	S	D	I	T	P	L	G	I	L	T	N	L	D	E	L	S	L	N	G	N	Q	L	K	D	I	G	T	L	A	S	L	T	N	L	T	D	L	D	L	A	N	N	Q	I	S	N	L	A	P	L	S	G	L	T	K	L	T	E	L	K	L	G	A	N	Q	I	S	N	I
Template Known Secondary structure			S						S	S						G	G	G	G	G		T	T							T	T	S						G	G	G	G	G		T	T		S						S	S						G	G	G	T	T		T	T		S						S	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N	L	N	T	L	L	I	N	N	N	L	L	S	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N
Query Conservation
Alig confidence																																																																						.
Template Conservation																																																																						.
Template Sequence		S	P	L	A	G	L	T	A	L	T	N	L	E	L	N	E	N	Q	L	E	D	I	S	P	I	S	N	L	K	N	L	T	Y	L	T	L	Y	F	N	N	I	S	D	I	S	P	V	S	S	L	T	K	L	Q	R	L	F	F	S	N	N	K	V	S	D	V	S	S	.	L	A	N	L	T	N	I	N	W	L	S
Template Known Secondary structure		G	G	G	T	T		T	T		S						S	S						G	G	G	G	G		T	T		S						S	S						G	G	G	T	T		T	T		S						S	S						G	G	.	G	G	G		T	T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	P	S	I	K	S	L	R	L	D	N	N	K	I	T	H	I	D	T	N	N	T	S	D	I	G
Query Conservation
Alig confidence													.	.
Template Conservation													.	.
Template Sequence		A	G	H	N	Q	I	S	D	L	T	P	.	.	L	A	N	L	T	R	I	T	Q	L	G	L	N	D	Q	A	W	T	N	A	P	V	N	Y	K	A	N	V	S
Template Known Secondary structure				S	S				B		G	G	.	.	G	T	T		T	T																				S
Template Predicted Secondary structure													.	.
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400			.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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