Job Description P76123 Confidence 99.96% Date Thu Jan 5 12:19:16 GMT 2012 Rank 6 Aligned Residues 272 % Identity 13% Template c2id5D_ PDB info PDB header:ligand binding protein,membrane protein Chain: D: PDB Molecule:leucine rich repeat neuronal 6a; PDBTitle: crystal structure of the lingo-1 ectodomain Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																					.
Query SS confidence																												.	.	.																					.
Query Sequence		I	T	D	L	I	L	H	N	H	P	R	M	K	T	I	T	L	N	D	N	H	I	A	H	L	N	.	.	.	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	.	N	D	I	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y
Query Conservation																												.	.	.																					.
Alig confidence																												.	.	.																					.
Template Conservation
Template Sequence		L	N	Q	D	E	F	A	S	F	P	H	L	E	E	L	E	L	N	E	N	I	V	S	A	V	E	P	G	A	F	N	N	L	F	N	L	R	T	L	G	L	R	S	N	R	L	K	L	I	P	L	G	V	F	T	G	L	S	N	L	T	K	L	D	I	S	E	N	K	I	V	I	L	L	D	Y	M	F	Q	D
Template Known Secondary structure				T	T	T	T	T	T					S					T	T								S	S		S	T	T		T	T							T	T	S			S				T	T	T	T	T	T		T	T								S	S							T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	T	A	V	R	N	I	I	D	D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	N	L	K	S	L	E	V	G	D	N	D	L	V	Y	I	S	H	R	A	F	S	G	L	N	S	L	E	Q	L	T	L	E	K	C	N	L	T	S	I	P	T	E	A	L	S	H	L	H	G	L	I	V	L	R	L	R	H	L	N	I	N	A	I	R	D	Y	S	F	K	R	L	Y	R	L	K	V	L	E
Template Known Secondary structure			T	T									T	T						T	T	T	T	T	T		T	T								S				S	S							T	T		T	T								S								T	T		S		S		T	T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	N	N	N	A	L	R	N	I	D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	H	W	P	Y	L	D	T	M	T	P	N	C	L	Y	G	L	N	L	T	S	L	S	I	T	H	C	N	L	T	A	V	P	Y	L	A	V	R	H	L	V	Y	L	R	F	L	N	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T						T	T	T	T	T	T				S						S	S			S	S			T	T	T	T	T	T		T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	T	L	L	I	N	N	N	L	L	S	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	P	S	I	K	S	L	R	L	D	N	N	K	I	T	H	I	D	T	N	N	T	S	D	I	G	T	L
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	Y	N	P	I	S	T	I	E	G	S	M	L	H	E	L	L	R	L	Q	E	I	Q	L	V	G	G	Q	L	A	V	V	E	P	Y	A	F	R	G	L	N	Y	L	R	V	L	N	V	S	G	N	Q	L	T	T	L	E	E	S	V	F	H	S	V	G	N	L
Template Known Secondary structure		.	.	.	.	.	.	S	S							T	T	S	S	T	T		T	T								S	S			S				T	T	T	T	T	T		T	T							T	T	S			S				G	G	G		S		G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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