Job Description P76123 Confidence 99.97% Date Thu Jan 5 12:19:16 GMT 2012 Rank 1 Aligned Residues 284 % Identity 13% Template c2ft3B_ PDB info PDB header:structural protein, signaling protein Chain: B: PDB Molecule:biglycan; PDBTitle: crystal structure of the biglycan dimer core protein Resolution 3.40 Å

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		8	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure						.																																								.
Query SS confidence						.																																								.
Query Sequence		H	N	H	P	.	R	M	K	T	I	T	L	N	D	N	H	I	A	H	L	N	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	T	N	D	I	.	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T	A	V	R	N	I	I
Query Conservation						.																																								.
Alig confidence						.																																								.
Template Conservation
Template Sequence		F	G	C	H	C	H	L	R	V	V	Q	C	S	D	L	G	L	K	A	V	P	K	E	I	S	P	D	T	T	L	L	D	L	Q	N	N	D	I	S	E	L	R	K	D	D	F	K	G	L	Q	H	L	Y	A	L	V	L	V	N	N	K	I	S	K	I	H	E	K	A	F	S	P	L	R	K	L	Q	K	L	Y
Template Known Secondary structure		S	S					T	T						S	S			S	S	S		S				T	T								S	S							T	T	T	T	T	T		T	T								S	S							G	G	G	S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I	T	H	I	S	M	N	N	N	A	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	K	N	H	L	V	E	I	P	P	N	L	P	S	S	L	V	E	L	R	I	H	D	N	R	I	R	K	V	P	K	G	V	F	S	G	L	R	N	M	N	C	I	E	M	G	G	N	P	L	E	N	S	G	F	E	P	G	A	F	D	G	L	K	L	N	Y	L	R	I	S	E	A	K	L	T	G	I	P
Template Known Secondary structure				S	S				S			S	S			T	T								S								S	T	T	S	S	S		S	S								S	S				G	G	G	S		T	T	S	S		S				S			B			S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L	F	P	N	L	N	T	L	L	I	N	N
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	L	P	E	T	L	N	E	L	H	L	D	H	N	K	I	Q	A	I	E	L	E	D	L	L	R	Y	S	K	L	Y	R	L	G	L	G	H	N	Q	I	R	M	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	S	L	S	F	L	P	T	L	R	E	L	H	L	D	N
Template Known Secondary structure		S	S	S		T	T		S			B			S	S							T	T	T	T	T	T		T	T		S						S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	G	G	G	S		T	T								S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.							.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.															.	.
Query SS confidence																																							.	.	.	.	.	.															.	.
Query Sequence		N	L	L	S	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	T	Y	L	.	.	.	.	.	.	P	S	I	K	S	L	R	L	D	N	N	K	I	T	.	.	H	I	D	T	N	N	T	S	D	I	G	T	L
Query Conservation																																							.	.	.	.	.	.															.	.
Alig confidence																																							.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		N	K	L	S	R	V	P	A	G	L	P	D	L	K	L	L	Q	V	V	Y	L	H	T	N	N	I	T	K	V	G	V	N	D	F	C	P	V	G	F	G	V	K	R	A	Y	Y	N	G	I	S	L	F	N	N	P	V	P	Y	W	E	V	Q	P	A	T	F	R	C	V	T	D	R
Template Known Secondary structure		S				B			T	T	G	G	G		T	T							T	T	S				B			T	T	S	S	S		T	T			S	S					S						S	S	S	S		G	G	G	S		G	G	G	G	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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